POPTR_0016s05360 (Populus trichocarpa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 POPTR_0016s05360 T004735_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK08602.1
M01098_2.00 		Cannabis sativa
NYCACCGCYN
NRGCGGTGRN		 PBM
Lambert et al.(2019)
pTH11421 		0.815 0.980
DREB2F
M06630_2.00 		Arabidopsis thaliana
YCDCCRCCGCY
RGCGGYGGHGR		 Dap-seq
OMalley et al.(2016)
AT3G57600_col_a 		0.765 0.900
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.685 0.780
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.681 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0016s05360.1 AP2 28 79

Links

Other AP2 family TFs
Other Populus trichocarpa TFs

118 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
scaffold_500562.1 Arabidopsis lyrata scaffold_500562.1 I
LBD24 Arabidopsis thaliana AT3G26660 I
LBD23 Arabidopsis thaliana AT3G26620 D
Bostr.0556s0333 Boechera stricta Bostr.0556s0333 I
Bo3g065910 Brassica oleracea Bo3g065910 I
Cagra.3598s0013 Capsella grandiflora Cagra.3598s0013 I
Carubv10018979m.g Capsella rubella Carubv10018979m.g I
evm.TU.supercontig_1.339 Carica papaya evm.TU.supercontig_1.339 I
evm.TU.supercontig_1.335 Carica papaya evm.TU.supercontig_1.335 I
Ca_16884 Cicer arietinum Ca_16884 N
Cucsa.161230 Cucumis sativus Cucsa.161230 N
Cucsa.250990 Cucumis sativus Cucsa.250990 N
Eucgr.A02814 Eucalyptus grandis Eucgr.A02814 I
gene26806-v1.0-hybrid Fragaria vesca gene26806-v1.0-hybrid N
GLYMA14G02440 Glycine max GLYMA14G02440 N
Gorai.009G123600 Gossypium raimondii Gorai.009G123600 N
Gorai.008G280400 Gossypium raimondii Gorai.008G280400 N
LjT39A22.30.nd Lotus japonicus LjT39A22.30.nd N
chr3.CM0135.10.nc Lotus japonicus chr3.CM0135.10.nc N
MDP0000288452 Malus domestica MDP0000288452 N
cassava35977.valid.m1 Manihot esculenta cassava35977.valid.m1 I
MTR_7g028905 Medicago truncatula MTR_7g028905 N
MTR_5g093010 Medicago truncatula MTR_5g093010 N
mgf017470m Mimulus guttatus mgf017470m N
POPTR_0015s13870 Populus trichocarpa POPTR_0015s13870 N
POPTR_0012s13910 Populus trichocarpa POPTR_0012s13910 I
Pm016263 Prunus mume Pm016263 N
PRUPE_ppa024504mg Prunus persica PRUPE_ppa024504mg N
29613.m000372 Ricinus communis 29613.m000372 N
SapurV1A.0068s0590 Salix purpurea SapurV1A.0068s0590 N
SapurV1A.0400s0200 Salix purpurea SapurV1A.0400s0200 I
Solyc01g109240.1 Solanum lycopersicum Solyc01g109240.1 N
TCM_035123 Theobroma cacao TCM_035123 N
VIT_16s0100g00440 Vitis vinifera VIT_16s0100g00440 N