Cagra.0712s0008 (Capsella grandiflora)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cagra.0712s0008 T007710_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.800 0.980
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.719 0.816
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.719 0.816
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.719 0.816
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.699 0.796
PK08602.1
M01098_2.00 		Cannabis sativa
NYCACCGCYN
NRGCGGTGRN		 PBM
Lambert et al.(2019)
pTH11421 		0.688 0.776
Q8H769_WHEAT
M09721_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1_01 		0.686 0.776
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0712s0008.1.p AP2 32 83

Links

Other AP2 family TFs
Other Capsella grandiflora TFs

187 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DREB2C Arabidopsis lyrata scaffold_402826.1 I 0.699
Bo4g190040 Brassica oleracea Bo4g190040 I 0.000
Bra017011 Brassica rapa Bra017011 I 0.000
PK07402.1 Cannabis sativa PK07402.1 D 0.699
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.717
Ca_12446 Cicer arietinum Ca_12446 I 0.000
Cla006713 Citrullus lanatus Cla006713 I 0.715
Ciclev10032029m.g Citrus clementina Ciclev10032029m.g I 0.000
orange1.1g019546m.g Citrus sinensis orange1.1g019546m.g I 0.000
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.707
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.701
Eucgr.G03094 Eucalyptus grandis Eucgr.G03094 I 0.701
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I 0.681
GLYMA14G06080 Glycine max GLYMA14G06080 I 0.000
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.693
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.000
mgf007881m Mimulus guttatus mgf007881m I 0.000
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I 0.684
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.696
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.697
GSMUA_Achr3G00320_001 Musa acuminata GSMUA_Achr3G00320_001 I 0.713
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.708
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.706
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I 0.683
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.693
Pm018989 Prunus mume Pm018989 I 0.677
Pm003634 Prunus mume Pm003634 I 0.744
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.749
PRUPE_ppa007606mg Prunus persica PRUPE_ppa007606mg I 0.677
29729.m002292 Ricinus communis 29729.m002292 I 0.704
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I 0.678
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.691
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I 0.678
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.691
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.687
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.687
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.707
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.707
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.700