Cagra.0917s0073 (Capsella grandiflora)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cagra.0917s0073 T007718_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G65130
M06686_2.00 		Arabidopsis thaliana
YCDYCDCCRCCGCCN
NGGCGGYGGHGRHGR		 Dap-seq
OMalley et al.(2016)
At5g65130_col_a 		0.792 0.960
AT5G65130
M06687_2.00 		Arabidopsis thaliana
NNNNHNNHDSCRCCGMCMW
WKGKCGGYGSHDNNDNNNN		 Dap-seq
OMalley et al.(2016)
At5g65130_colamp_a 		0.792 0.960
RAP2-4
M01612_2.00 		Arabidopsis thaliana
NRCCGHCMNN
NNKGDCGGYN		 PBM
Weirauch et al.(2014)
pTH8092 		0.694 0.860
ERF055
M06577_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_col_a 		0.684 0.860
ERF055
M06578_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a 		0.684 0.860
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0917s0073.1.p AP2 113 164

Links

Other AP2 family TFs
Other Capsella grandiflora TFs

197 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00009p00268560 Amborella trichopoda AMTR_s00009p00268560 I 0.694
AMTR_s00010p00194910 Amborella trichopoda AMTR_s00010p00194910 I 0.694
AMTR_s00089p00102760 Amborella trichopoda AMTR_s00089p00102760 I 0.690
AMTR_s00107p00095070 Amborella trichopoda AMTR_s00107p00095070 I 0.689
Aquca_014_00591 Aquilegia coerulea Aquca_014_00591 I 0.690
Aquca_014_00592 Aquilegia coerulea Aquca_014_00592 I 0.694
fgenesh2_kg.1__2408__AT1G22190.1 Arabidopsis lyrata fgenesh2_kg.1__2408__AT1G22190.1 I 0.694
fgenesh2_kg.1__3660__AT1G36060.1 Arabidopsis lyrata fgenesh2_kg.1__3660__AT1G36060.1 I 0.684
RAP2.4 Arabidopsis lyrata fgenesh2_kg.2__2105__AT1G78080.1 I 0.694
fgenesh2_kg.7__195__AT4G39780.1 Arabidopsis lyrata fgenesh2_kg.7__195__AT4G39780.1 I 0.681
fgenesh2_kg.7__2984__AT4G13620.1 Arabidopsis lyrata fgenesh2_kg.7__2984__AT4G13620.1 I 0.706
scaffold_400172.1 Arabidopsis lyrata scaffold_400172.1 I 0.688
scaffold_803239.1 Arabidopsis lyrata scaffold_803239.1 I 0.792
RAP2-13 Arabidopsis thaliana AT1G22190 I 0.694
ERF055 Arabidopsis thaliana AT1G36060 D 0.684
RAP2-4 Arabidopsis thaliana AT1G78080 D 0.694
ERF056 Arabidopsis thaliana AT2G22200 I 0.679
ERF062 Arabidopsis thaliana AT4G13620 I 0.706
ERF060 Arabidopsis thaliana AT4G39780 I 0.681
AT5G65130 Arabidopsis thaliana AT5G65130 D 0.792
Bostr.0568s0279 Boechera stricta Bostr.0568s0279 I 0.831
Bostr.12659s0070 Boechera stricta Bostr.12659s0070 I 0.694
Bostr.20129s0241 Boechera stricta Bostr.20129s0241 I 0.694
Bostr.2021s0122 Boechera stricta Bostr.2021s0122 I 0.696
Bostr.20910s0012 Boechera stricta Bostr.20910s0012 I 0.684
Bostr.25542s0167 Boechera stricta Bostr.25542s0167 I 0.681
BRADI3G35560 Brachypodium distachyon BRADI3G35560 I 0.689
BRADI4G29010 Brachypodium distachyon BRADI4G29010 I 0.695
Bo00790s010 Brassica oleracea Bo00790s010 I 0.729
Bo04101s010 Brassica oleracea Bo04101s010 I 0.684
Bo1g002840 Brassica oleracea Bo1g002840 I 0.686
Bo3g100470 Brassica oleracea Bo3g100470 I 0.735
Bo3g152610 Brassica oleracea Bo3g152610 I 0.681
Bo4g130860 Brassica oleracea Bo4g130860 I 0.686
Bo5g037400 Brassica oleracea Bo5g037400 I 0.694
Bo5g069450 Brassica oleracea Bo5g069450 I 0.684
Bo6g081850 Brassica oleracea Bo6g081850 I 0.690
Bo6g121730 Brassica oleracea Bo6g121730 I 0.694
Bo7g119000 Brassica oleracea Bo7g119000 I 0.696
Bra003659 Brassica rapa Bra003659 I 0.680
Bra008343 Brassica rapa Bra008343 I 0.694
Bra011833 Brassica rapa Bra011833 I 0.684
Bra015634 Brassica rapa Bra015634 I 0.694
Bra017879 Brassica rapa Bra017879 I 0.696
Bra024357 Brassica rapa Bra024357 I 0.720
Bra024358 Brassica rapa Bra024358 I 0.729
Bra031371 Brassica rapa Bra031371 I 0.694
Bra032724 Brassica rapa Bra032724 I 0.696
Bra040381 Brassica rapa Bra040381 I 0.684
PK18885.1 Cannabis sativa PK18885.1 I 0.690
PK27482.1 Cannabis sativa PK27482.1 I 0.694
Cagra.0096s0029 Capsella grandiflora Cagra.0096s0029 I 0.694
Cagra.1707s0001 Capsella grandiflora Cagra.1707s0001 I 0.684
Cagra.5414s0001 Capsella grandiflora Cagra.5414s0001 I 0.678
Cagra.6748s0006 Capsella grandiflora Cagra.6748s0006 I 0.706
Carubv10006710m.g Capsella rubella Carubv10006710m.g I 0.706
Carubv10007787m.g Capsella rubella Carubv10007787m.g I 0.678
Carubv10009949m.g Capsella rubella Carubv10009949m.g I 0.684
Carubv10012538m.g Capsella rubella Carubv10012538m.g I 0.684
Carubv10020567m.g Capsella rubella Carubv10020567m.g I 0.694
Carubv10025369m.g Capsella rubella Carubv10025369m.g I 0.679
Carubv10026925m.g Capsella rubella Carubv10026925m.g I 0.831
evm.TU.supercontig_36.112 Carica papaya evm.TU.supercontig_36.112 I 0.694
evm.TU.supercontig_996.1 Carica papaya evm.TU.supercontig_996.1 I 0.694
Ca_09578 Cicer arietinum Ca_09578 I 0.682
Ca_16631 Cicer arietinum Ca_16631 I 0.684
Ca_23799 Cicer arietinum Ca_23799 I 0.696
Cla014376 Citrullus lanatus Cla014376 I 0.694
Cla022420 Citrullus lanatus Cla022420 I 0.694
Cla023489 Citrullus lanatus Cla023489 I 0.684
Ciclev10001563m.g Citrus clementina Ciclev10001563m.g I 0.694
Ciclev10025961m.g Citrus clementina Ciclev10025961m.g I 0.698
orange1.1g017798m.g Citrus sinensis orange1.1g017798m.g I 0.694
orange1.1g018103m.g Citrus sinensis orange1.1g018103m.g I 0.698
Cucsa.064390 Cucumis sativus Cucsa.064390 I 0.684
Cucsa.104510 Cucumis sativus Cucsa.104510 I 0.703
Cucsa.154520 Cucumis sativus Cucsa.154520 I 0.694
Eucgr.F00497 Eucalyptus grandis Eucgr.F00497 I 0.686
Eucgr.F02440 Eucalyptus grandis Eucgr.F02440 I 0.694
Eucgr.I00422 Eucalyptus grandis Eucgr.I00422 I 0.696
Eucgr.L03532 Eucalyptus grandis Eucgr.L03532 I 0.696
Thhalv10005326m.g Eutrema salsugineum Thhalv10005326m.g I 0.725
Thhalv10008326m.g Eutrema salsugineum Thhalv10008326m.g I 0.694
Thhalv10018771m.g Eutrema salsugineum Thhalv10018771m.g I 0.694
Thhalv10025587m.g Eutrema salsugineum Thhalv10025587m.g I 0.706
Thhalv10025958m.g Eutrema salsugineum Thhalv10025958m.g I 0.696
gene16350-v1.0-hybrid Fragaria vesca gene16350-v1.0-hybrid I 0.704
gene22114-v1.0-hybrid Fragaria vesca gene22114-v1.0-hybrid I 0.694
GLYMA04G11290 Glycine max GLYMA04G11290 I 0.694
GLYMA05G31370 Glycine max GLYMA05G31370 I 0.678
GLYMA06G11010 Glycine max GLYMA06G11010 I 0.694
GLYMA08G14600 Glycine max GLYMA08G14600 I 0.678
GLYMA13G01930 Glycine max GLYMA13G01930 I 0.686
GLYMA14G34590 Glycine max GLYMA14G34590 I 0.686
GLYMA18G02170 Glycine max GLYMA18G02170 I 0.678
Gorai.003G038200 Gossypium raimondii Gorai.003G038200 I 0.690
Gorai.005G093500 Gossypium raimondii Gorai.005G093500 I 0.737
Gorai.006G207800 Gossypium raimondii Gorai.006G207800 I 0.698
Gorai.008G153600 Gossypium raimondii Gorai.008G153600 I 0.680
Gorai.008G253900 Gossypium raimondii Gorai.008G253900 I 0.708
Gorai.009G238800 Gossypium raimondii Gorai.009G238800 I 0.694
Gorai.010G043200 Gossypium raimondii Gorai.010G043200 I 0.694
Gorai.012G130600 Gossypium raimondii Gorai.012G130600 I 0.699
LPERR08G11750 Leersia perrieri LPERR08G11750 I 0.692
LPERR09G05410 Leersia perrieri LPERR09G05410 I 0.695
Lus10000582.g Linum usitatissimum Lus10000582.g I 0.689
Lus10016801.g Linum usitatissimum Lus10016801.g I 0.703
Lus10019665.g Linum usitatissimum Lus10019665.g I 0.689
Lus10020913.g Linum usitatissimum Lus10020913.g I 0.694
Lus10022497.g Linum usitatissimum Lus10022497.g I 0.688
Lus10033463.g Linum usitatissimum Lus10033463.g I 0.694
chr2.CM0608.10.nd Lotus japonicus chr2.CM0608.10.nd I 0.696
chr5.CM0909.290.nc Lotus japonicus chr5.CM0909.290.nc I 0.696
LjSGA_026196.1 Lotus japonicus LjSGA_026196.1 I 0.694
MDP0000313476 Malus domestica MDP0000313476 I 0.694
MDP0000453797 Malus domestica MDP0000453797 I 0.684
MDP0000683814 Malus domestica MDP0000683814 I 0.684
MDP0000865032 Malus domestica MDP0000865032 I 0.684
cassava10153.m1 Manihot esculenta cassava10153.m1 I 0.694
cassava23925.valid.m1 Manihot esculenta cassava23925.valid.m1 I 0.690
cassava31195.valid.m1 Manihot esculenta cassava31195.valid.m1 I 0.690
cassava36179.valid.m1 Manihot esculenta cassava36179.valid.m1 I 0.692
MTR_3g074130 Medicago truncatula MTR_3g074130 I 0.694
MTR_5g062700 Medicago truncatula MTR_5g062700 I 0.686
MTR_8g090350 Medicago truncatula MTR_8g090350 I 0.682
mgf002388m Mimulus guttatus mgf002388m I 0.694
mgf012639m Mimulus guttatus mgf012639m I 0.714
mgf016403m Mimulus guttatus mgf016403m I 0.692
mgf023311m Mimulus guttatus mgf023311m I 0.690
GSMUA_Achr10G19030_001 Musa acuminata GSMUA_Achr10G19030_001 I 0.684
GSMUA_Achr10G30440_001 Musa acuminata GSMUA_Achr10G30440_001 I 0.694
GSMUA_Achr1G27990_001 Musa acuminata GSMUA_Achr1G27990_001 N 0.682
GSMUA_Achr3G04360_001 Musa acuminata GSMUA_Achr3G04360_001 I 0.680
GSMUA_Achr9G12950_001 Musa acuminata GSMUA_Achr9G12950_001 I 0.691
GSMUA_AchrUn_randomG20840_001 Musa acuminata GSMUA_AchrUn_randomG20840_001 I 0.694
OBART08G14280 Oryza barthii OBART08G14280 I 0.692
OB09G15200 Oryza brachyantha OB09G15200 I 0.695
ORGLA08G0124900 Oryza glaberrima ORGLA08G0124900 I 0.692
ORGLA09G0057100 Oryza glaberrima ORGLA09G0057100 I 0.695
OGLUM08G15030 Oryza glumaepatula OGLUM08G15030 I 0.692
OGLUM09G08150 Oryza glumaepatula OGLUM09G08150 I 0.695
BGIOSGA028650 Oryza indica BGIOSGA028650 I 0.692
BGIOSGA030624 Oryza indica BGIOSGA030624 I 0.695
OMERI09G06210 Oryza meridionalis OMERI09G06210 I 0.695
OMERI09G06220 Oryza meridionalis OMERI09G06220 I 0.695
ONIVA08G15160 Oryza nivara ONIVA08G15160 I 0.692
ONIVA09G06980 Oryza nivara ONIVA09G06980 I 0.695
OPUNC08G13450 Oryza punctata OPUNC08G13450 I 0.692
OPUNC09G06680 Oryza punctata OPUNC09G06680 I 0.695
ORUFI08G16150 Oryza rufipogon ORUFI08G16150 I 0.692
ORUFI09G08380 Oryza rufipogon ORUFI09G08380 I 0.695
OS08G0408500 Oryza sativa OS08G0408500 I 0.692
Pavir.Ba02199 Panicum virgatum Pavir.Ba02199 I 0.695
Pavir.Bb01980 Panicum virgatum Pavir.Bb01980 I 0.695
Pavir.Fa01600 Panicum virgatum Pavir.Fa01600 I 0.695
Pavir.Fb01192 Panicum virgatum Pavir.Fb01192 I 0.695
Pavir.J13316 Panicum virgatum Pavir.J13316 I 0.685
Pavir.J25956 Panicum virgatum Pavir.J25956 I 0.695
e_gw1.187.17.1 Physcomitrella patens e_gw1.187.17.1 I 0.685
e_gw1.335.26.1 Physcomitrella patens e_gw1.335.26.1 I 0.693
POPTR_0002s09480 Populus trichocarpa POPTR_0002s09480 I 0.694
POPTR_0005s07900 Populus trichocarpa POPTR_0005s07900 I 0.686
POPTR_0005s16690 Populus trichocarpa POPTR_0005s16690 I 0.694
POPTR_0007s05690 Populus trichocarpa POPTR_0007s05690 I 0.690
Pm002052 Prunus mume Pm002052 I 0.694
Pm004824 Prunus mume Pm004824 I 0.694
PRUPE_ppa007193mg Prunus persica PRUPE_ppa007193mg I 0.694
PRUPE_ppa008234mg Prunus persica PRUPE_ppa008234mg I 0.694
PRUPE_ppa020676mg Prunus persica PRUPE_ppa020676mg I 0.694
28206.m000104 Ricinus communis 28206.m000104 I 0.690
29908.m006005 Ricinus communis 29908.m006005 I 0.694
SapurV1A.0010s0170 Salix purpurea SapurV1A.0010s0170 I 0.694
SapurV1A.0075s0120 Salix purpurea SapurV1A.0075s0120 I 0.690
SapurV1A.0335s0040 Salix purpurea SapurV1A.0335s0040 I 0.692
SapurV1A.0684s0120 Salix purpurea SapurV1A.0684s0120 I 0.690
SELMODRAFT_104980 Selaginella moellendorffii SELMODRAFT_104980 I 0.703
SELMODRAFT_73149 Selaginella moellendorffii SELMODRAFT_73149 I 0.689
Si030684m.g Setaria italica Si030684m.g I 0.695
Solyc04g054910.2 Solanum lycopersicum Solyc04g054910.2 I 0.690
Solyc04g072900.1 Solanum lycopersicum Solyc04g072900.1 I 0.679
Solyc12g056980.1 Solanum lycopersicum Solyc12g056980.1 I 0.690
PGSC0003DMG400008538 Solanum tuberosum PGSC0003DMG400008538 I 0.690
PGSC0003DMG400009475 Solanum tuberosum PGSC0003DMG400009475 I 0.679
PGSC0003DMG400020625 Solanum tuberosum PGSC0003DMG400020625 I 0.690
Sb02g023230 Sorghum bicolor Sb02g023230 I 0.695
Sb07g020090 Sorghum bicolor Sb07g020090 I 0.695
TCM_001147 Theobroma cacao TCM_001147 I 0.690
TCM_034939 Theobroma cacao TCM_034939 I 0.694
Traes_5BL_4D65B66E2 Triticum aestivum Traes_5BL_4D65B66E2 I 0.695
VIT_00s0662g00030 Vitis vinifera VIT_00s0662g00030 I 0.680
VIT_00s0662g00040 Vitis vinifera VIT_00s0662g00040 I 0.680
VIT_18s0001g05250 Vitis vinifera VIT_18s0001g05250 I 0.694
VIT_19s0014g03180 Vitis vinifera VIT_19s0014g03180 I 0.711
GRMZM2G061487 Zea mays GRMZM2G061487 I 0.728
GRMZM2G100982 Zea mays GRMZM2G100982 I 0.693
GRMZM2G141679 Zea mays GRMZM2G141679 I 0.695
GRMZM5G846057 Zea mays GRMZM5G846057 I 0.693