COCMIDRAFT_338 (Bipolaris oryzae)
APSES

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04383 (KilA-N) IPR018004 COCMIDRAFT_338 T011823_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANIA_03154
M01650_2.00 		Aspergillus nidulans
NNACGCG
CGCGTNN		 PBM
Weirauch et al.(2014)
pTH8232 		0.813 0.643
estExt_fgenesh2_pg.C_10694_CONSTRUCT
M01102_2.00 		PBM CONSTRUCTS
NNACGCGW
WCGCGTNN		 PBM
Lambert et al.(2019)
pTH9838 		0.788 0.700
NCU07246
M01653_2.00 		Neurospora crassa
NDCRCGN
NCGYGHN		 PBM
Weirauch et al.(2014)
pTH8957 		0.781 0.700
MBP1
M00003_2.00 		Saccharomyces cerevisiae
VACGCGWD
HWCGCGTB		 PBM
Badis et al.(2008)
MBP1_4486 		0.744 0.557
MBP1
M01514_2.00 		Saccharomyces cerevisiae
NNNNDCRCGH
DCGYGHNNNN		 PBM
Zhu et al.(2009)
Mbp1 		0.744 0.557
MBP1
M07434_2.00 		Saccharomyces cerevisiae
NDCGCGH
DCGCGHN		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0329.1 		0.744 0.557
MBP1
M08472_2.00 		Saccharomyces cerevisiae
NDCGCGH
DCGCGHN		 Misc
DeBoer et al.(2011)
YDL056W_500 		0.744 0.557
NCU07587
M01654_2.00 		Neurospora crassa
NNNDCRCGN
NCGYGHNNN		 PBM
Weirauch et al.(2014)
pTH9687 		0.724 0.614
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EUC51123 APSES 22 93

Links

Other APSES family TFs
Other Bipolaris oryzae TFs

433 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK03816.1 Cannabis sativa PK03816.1 N
evm.TU.supercontig_181.13 Carica papaya evm.TU.supercontig_181.13 N
Ca_12978 Cicer arietinum Ca_12978 N
Cla015679 Citrullus lanatus Cla015679 N
orange1.1g048259m.g Citrus sinensis orange1.1g048259m.g N
Cucsa.358990 Cucumis sativus Cucsa.358990 N
Eucgr.J02994 Eucalyptus grandis Eucgr.J02994 N
gene05956-v1.0-hybrid Fragaria vesca gene05956-v1.0-hybrid N
GLYMA09G32130 Glycine max GLYMA09G32130 N
GLYMA07G09690 Glycine max GLYMA07G09690 N
GLYMA13G43651 Glycine max GLYMA13G43651 N
GLYMA15G01730 Glycine max GLYMA15G01730 N
Gorai.006G098600 Gossypium raimondii Gorai.006G098600 N
Gorai.011G076900 Gossypium raimondii Gorai.011G076900 N
Gorai.010G228000 Gossypium raimondii Gorai.010G228000 N
Gorai.009G133300 Gossypium raimondii Gorai.009G133300 N
Lus10035893.g Linum usitatissimum Lus10035893.g N
Lus10025772.g Linum usitatissimum Lus10025772.g N
MDP0000578820 Malus domestica MDP0000578820 N
MDP0000500940 Malus domestica MDP0000500940 N
MDP0000276691 Malus domestica MDP0000276691 N
MDP0000260359 Malus domestica MDP0000260359 N
cassava1476.valid.m1 Manihot esculenta cassava1476.valid.m1 N
MTR_2g102227 Medicago truncatula MTR_2g102227 N
MTR_6g486270 Medicago truncatula MTR_6g486270 N
mgf024433m Mimulus guttatus mgf024433m N
POPTR_0001s18000 Populus trichocarpa POPTR_0001s18000 N
POPTR_0003s05470 Populus trichocarpa POPTR_0003s05470 N
Pm013502 Prunus mume Pm013502 N
Pm027397 Prunus mume Pm027397 N
PRUPE_ppa009556mg Prunus persica PRUPE_ppa009556mg N
29872.m000548 Ricinus communis 29872.m000548 N
SapurV1A.0002s0250 Salix purpurea SapurV1A.0002s0250 N
SapurV1A.1168s0060 Salix purpurea SapurV1A.1168s0060 N
SapurV1A.3798s0010 Salix purpurea SapurV1A.3798s0010 N
PGSC0003DMG400031382 Solanum tuberosum PGSC0003DMG400031382 N
TCM_028688 Theobroma cacao TCM_028688 N
VIT_09s0002g04700 Vitis vinifera VIT_09s0002g04700 N