Gorai.012G137700 (Gossypium raimondii)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 Gorai.012G137700 T016127_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARID3
M06695_2.00 		Arabidopsis thaliana
AAWWHNAAATYAAWW
WWTTRATTTNDWWTT		 Dap-seq
OMalley et al.(2016)
AT2G17410_col_a 		0.667 0.741
ARID6
M06694_2.00 		Arabidopsis thaliana
HAATTRAWTTN
NAAWTYAATTD		 Dap-seq
OMalley et al.(2016)
AT1G20910_col_a 		0.615 0.800
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.012G137700.1 ARID/BRIGHT 178 263

Links

Other ARID/BRIGHT family TFs
Other Gossypium raimondii TFs

153 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_10743 Aegilops tauschii F775_10743 I
AMTR_s00022p00198330 Amborella trichopoda AMTR_s00022p00198330 I
AMTR_s00106p00142470 Amborella trichopoda AMTR_s00106p00142470 I
Aquca_009_00161 Aquilegia coerulea Aquca_009_00161 I
Aquca_033_00055 Aquilegia coerulea Aquca_033_00055 I
SPL12 Arabidopsis lyrata scaffold_503227.1 I
BRADI3G40030 Brachypodium distachyon BRADI3G40030 I
BRADI4G33770 Brachypodium distachyon BRADI4G33770 I
PK06791.1 Cannabis sativa PK06791.1 D
PK11310.1 Cannabis sativa PK11310.1 I
PK18312.1 Cannabis sativa PK18312.1 I
evm.TU.supercontig_80.88 Carica papaya evm.TU.supercontig_80.88 I
Ca_03548 Cicer arietinum Ca_03548 I
Ca_07299 Cicer arietinum Ca_07299 I
Ca_16243 Cicer arietinum Ca_16243 I
Cla017596 Citrullus lanatus Cla017596 I
Ciclev10009879m.g Citrus clementina Ciclev10009879m.g I
Ciclev10011938m.g Citrus clementina Ciclev10011938m.g I
Ciclev10016841m.g Citrus clementina Ciclev10016841m.g I
Ciclev10018697m.g Citrus clementina Ciclev10018697m.g I
orange1.1g001971m.g Citrus sinensis orange1.1g001971m.g I
orange1.1g029650m.g Citrus sinensis orange1.1g029650m.g I
orange1.1g032937m.g Citrus sinensis orange1.1g032937m.g I
orange1.1g046416m.g Citrus sinensis orange1.1g046416m.g I
Cucsa.192470 Cucumis sativus Cucsa.192470 I
Cucsa.242790 Cucumis sativus Cucsa.242790 I
Eucgr.A01019 Eucalyptus grandis Eucgr.A01019 I
Eucgr.A02441 Eucalyptus grandis Eucgr.A02441 I
Eucgr.K01046 Eucalyptus grandis Eucgr.K01046 I
Eucgr.K01828 Eucalyptus grandis Eucgr.K01828 I
gene22660-v1.0-hybrid Fragaria vesca gene22660-v1.0-hybrid I
GLYMA02G30670 Glycine max GLYMA02G30670 I
GLYMA03G29901 Glycine max GLYMA03G29901 I
GLYMA06G36140 Glycine max GLYMA06G36140 I
GLYMA12G27330 Glycine max GLYMA12G27330 I
GLYMA18G36960 Glycine max GLYMA18G36960 I
GLYMA19G32800 Glycine max GLYMA19G32800 I
Gorai.002G156700 Gossypium raimondii Gorai.002G156700 I
Gorai.006G066700 Gossypium raimondii Gorai.006G066700 I
Gorai.007G362000 Gossypium raimondii Gorai.007G362000 I
Gorai.008G135700 Gossypium raimondii Gorai.008G135700 I
Gorai.013G169800 Gossypium raimondii Gorai.013G169800 I
LPERR04G17030 Leersia perrieri LPERR04G17030 I
LPERR08G16940 Leersia perrieri LPERR08G16940 I
LPERR09G10900 Leersia perrieri LPERR09G10900 I
Lus10004523.g Linum usitatissimum Lus10004523.g I
Lus10010071.g Linum usitatissimum Lus10010071.g I
Lus10012020.g Linum usitatissimum Lus10012020.g I
Lus10016275.g Linum usitatissimum Lus10016275.g I
Lus10021034.g Linum usitatissimum Lus10021034.g I
Lus10023818.g Linum usitatissimum Lus10023818.g I
chr1.CM0122.330.nc Lotus japonicus chr1.CM0122.330.nc I
chr3.CM0282.980.nc Lotus japonicus chr3.CM0282.980.nc I
LjSGA_121222.1 Lotus japonicus LjSGA_121222.1 I
MDP0000156994 Malus domestica MDP0000156994 I
MDP0000297978 Malus domestica MDP0000297978 I
MDP0000861601 Malus domestica MDP0000861601 I
cassava36085.valid.m1 Manihot esculenta cassava36085.valid.m1 I
cassava37839.valid.m1 Manihot esculenta cassava37839.valid.m1 I
cassava39260.m1 Manihot esculenta cassava39260.m1 N
MTR_1g053715 Medicago truncatula MTR_1g053715 I
MTR_1g086250 Medicago truncatula MTR_1g086250 I
MTR_7g092930 Medicago truncatula MTR_7g092930 I
MTR_8g463140 Medicago truncatula MTR_8g463140 I
mgf001295m Mimulus guttatus mgf001295m I
mgf011616m Mimulus guttatus mgf011616m I
mgf012995m Mimulus guttatus mgf012995m I
mgf025134m Mimulus guttatus mgf025134m I
GSMUA_Achr2G01820_001 Musa acuminata GSMUA_Achr2G01820_001 I
GSMUA_Achr2G03070_001 Musa acuminata GSMUA_Achr2G03070_001 I
GSMUA_Achr3G11170_001 Musa acuminata GSMUA_Achr3G11170_001 I
GSMUA_Achr3G24520_001 Musa acuminata GSMUA_Achr3G24520_001 I
GSMUA_Achr4G16050_001 Musa acuminata GSMUA_Achr4G16050_001 I
GSMUA_Achr6G22280_001 Musa acuminata GSMUA_Achr6G22280_001 I
GSMUA_Achr7G02020_001 Musa acuminata GSMUA_Achr7G02020_001 I
GSMUA_Achr7G20510_001 Musa acuminata GSMUA_Achr7G20510_001 I
GSMUA_Achr8G25550_001 Musa acuminata GSMUA_Achr8G25550_001 I
GSMUA_Achr9G22260_001 Musa acuminata GSMUA_Achr9G22260_001 I
GSMUA_Achr9G27660_001 Musa acuminata GSMUA_Achr9G27660_001 I
OBART04G20940 Oryza barthii OBART04G20940 I
OBART09G14800 Oryza barthii OBART09G14800 I
OB04G27960 Oryza brachyantha OB04G27960 I
OB08G26920 Oryza brachyantha OB08G26920 I
OB09G21350 Oryza brachyantha OB09G21350 N
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I
ORGLA08G0176500 Oryza glaberrima ORGLA08G0176500 I
ORGLA09G0114000 Oryza glaberrima ORGLA09G0114000 I
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I
OGLUM08G21260 Oryza glumaepatula OGLUM08G21260 I
OGLUM09G15430 Oryza glumaepatula OGLUM09G15430 I
BGIOSGA016888 Oryza indica BGIOSGA016888 I
BGIOSGA029541 Oryza indica BGIOSGA029541 I
OMERI04G17360 Oryza meridionalis OMERI04G17360 I
OMERI09G11520 Oryza meridionalis OMERI09G11520 I
ONIVA04G19190 Oryza nivara ONIVA04G19190 I
ONIVA08G22610 Oryza nivara ONIVA08G22610 I
ONIVA09G15400 Oryza nivara ONIVA09G15400 I
OPUNC04G18620 Oryza punctata OPUNC04G18620 I
OPUNC08G18140 Oryza punctata OPUNC08G18140 I
OPUNC09G13250 Oryza punctata OPUNC09G13250 I
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I
ORUFI08G22440 Oryza rufipogon ORUFI08G22440 I
ORUFI09G15960 Oryza rufipogon ORUFI09G15960 I
SPL7 Oryza sativa OS04G0551500 I
SPL14 Oryza sativa OS08G0509600 I
OS09G0491532 Oryza sativa OS09G0491532 I
Pavir.Ba01711 Panicum virgatum Pavir.Ba01711 I
Pavir.Fb01946 Panicum virgatum Pavir.Fb01946 I
Pavir.Ia00235 Panicum virgatum Pavir.Ia00235 I
Pavir.J01500 Panicum virgatum Pavir.J01500 I
Pavir.J11258 Panicum virgatum Pavir.J11258 I
estExt_fgenesh1_pg.C_1940032 Physcomitrella patens estExt_fgenesh1_pg.C_1940032 I
estExt_fgenesh1_pg.C_1940033 Physcomitrella patens estExt_fgenesh1_pg.C_1940033 D
fgenesh1_pg.scaffold_50000083 Physcomitrella patens fgenesh1_pg.scaffold_50000083 I
POPTR_0001s40870 Populus trichocarpa POPTR_0001s40870 I
POPTR_0002s18970 Populus trichocarpa POPTR_0002s18970 I
POPTR_0007s01030 Populus trichocarpa POPTR_0007s01030 I
POPTR_0011s11770 Populus trichocarpa POPTR_0011s11770 I
POPTR_0014s10960 Populus trichocarpa POPTR_0014s10960 I
Pm002693 Prunus mume Pm002693 I
Pm007035 Prunus mume Pm007035 I
PRUPE_ppa007056mg Prunus persica PRUPE_ppa007056mg I
PRUPE_ppa021582mg Prunus persica PRUPE_ppa021582mg I
28211.m000132 Ricinus communis 28211.m000132 I
29269.m000250 Ricinus communis 29269.m000250 I
30076.m004574 Ricinus communis 30076.m004574 I
SapurV1A.0014s0380 Salix purpurea SapurV1A.0014s0380 I
SapurV1A.0018s0470 Salix purpurea SapurV1A.0018s0470 I
SapurV1A.0118s0110 Salix purpurea SapurV1A.0118s0110 I
SapurV1A.0156s0200 Salix purpurea SapurV1A.0156s0200 I
SapurV1A.0294s0270 Salix purpurea SapurV1A.0294s0270 I
SapurV1A.1264s0060 Salix purpurea SapurV1A.1264s0060 I
SapurV1A.3749s0010 Salix purpurea SapurV1A.3749s0010 I
Si013870m.g Setaria italica Si013870m.g I
Si030195m.g Setaria italica Si030195m.g I
Si034095m.g Setaria italica Si034095m.g I
Solyc01g068100.2 Solanum lycopersicum Solyc01g068100.2 I
Solyc05g012040.2 Solanum lycopersicum Solyc05g012040.2 I
PGSC0003DMG400005196 Solanum tuberosum PGSC0003DMG400005196 I
PGSC0003DMG400022824 Solanum tuberosum PGSC0003DMG400022824 I
PGSC0003DMG400028308 Solanum tuberosum PGSC0003DMG400028308 I
PGSC0003DMG400032817 Solanum tuberosum PGSC0003DMG400032817 I
Sb01g002530 Sorghum bicolor Sb01g002530 I
Sb02g028420 Sorghum bicolor Sb02g028420 I
Sb06g024630 Sorghum bicolor Sb06g024630 I
Sb07g027740 Sorghum bicolor Sb07g027740 I
TCM_004922 Theobroma cacao TCM_004922 I
TCM_008150 Theobroma cacao TCM_008150 I
TCM_024873 Theobroma cacao TCM_024873 I
TCM_031595 Theobroma cacao TCM_031595 I
Traes_5DL_C588E74B5 Triticum aestivum Traes_5DL_C588E74B5 N
TRIUR3_23872 Triticum urartu TRIUR3_23872 I
VIT_07s0005g02260 Vitis vinifera VIT_07s0005g02260 I
VIT_08s0007g06270 Vitis vinifera VIT_08s0007g06270 I
VIT_12s0028g03350 Vitis vinifera VIT_12s0028g03350 I
GRMZM2G126018 Zea mays GRMZM2G126018 I
GRMZM2G138421 Zea mays GRMZM2G138421 I
GRMZM2G156756 Zea mays GRMZM2G156756 I
GRMZM2G160917 Zea mays GRMZM2G160917 I
GRMZM2G307588 Zea mays GRMZM2G307588 I