orange1.1g009744m.g (Citrus sinensis)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 orange1.1g009744m.g T016158_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARID3
M06695_2.00 		Arabidopsis thaliana
AAWWHNAAATYAAWW
WWTTRATTTNDWWTT		 Dap-seq
OMalley et al.(2016)
AT2G17410_col_a 		0.747 0.859
ARID6
M06694_2.00 		Arabidopsis thaliana
HAATTRAWTTN
NAAWTYAATTD		 Dap-seq
OMalley et al.(2016)
AT1G20910_col_a 		0.629 0.718
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g009726m ARID/BRIGHT 235 320
orange1.1g009739m ARID/BRIGHT 235 320
orange1.1g009744m ARID/BRIGHT 235 320
orange1.1g011847m ARID/BRIGHT 235 320
orange1.1g016768m ARID/BRIGHT 235 320
orange1.1g022877m ARID/BRIGHT 235 289

Links

Other ARID/BRIGHT family TFs
Other Citrus sinensis TFs

225 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_008210 Acremonium chrysogenum ACRE_008210 N 0.436
F775_06069 Aegilops tauschii F775_06069 I 0.741
F775_22367 Aegilops tauschii F775_22367 N 0.663
F775_31416 Aegilops tauschii F775_31416 N 0.548
AMTR_s00022p00128600 Amborella trichopoda AMTR_s00022p00128600 I 0.741
ANCCAN_16550 Ancylostoma caninum ANCCAN_16550 N 0.482
ASIM_0001975501 Anisakis simplex ASIM_0001975501 N 0.447
ACOM023832 Anopheles coluzzii ACOM023832 N 0.577
Aquca_007_00955 Aquilegia coerulea Aquca_007_00955 I 0.685
fgenesh2_kg.1__2281__AT1G20910.1 Arabidopsis lyrata fgenesh2_kg.1__2281__AT1G20910.1 I 0.629
fgenesh2_kg.2__1939__AT1G76510.1 Arabidopsis lyrata fgenesh2_kg.2__1939__AT1G76510.1 I 0.705
fgenesh2_kg.3__3325__AT2G17410.1 Arabidopsis lyrata fgenesh2_kg.3__3325__AT2G17410.1 I 0.747
ARID6 Arabidopsis thaliana AT1G20910 D 0.629
AT1G76510 Arabidopsis thaliana AT1G76510 I 0.705
ARID3 Arabidopsis thaliana AT2G17410 D 0.747
ACEP25970 Atta cephalotes ACEP25970 N 0.490
Bostr.18351s0201 Boechera stricta Bostr.18351s0201 I 0.704
Bostr.20129s0090 Boechera stricta Bostr.20129s0090 I 0.705
Bostr.7128s0681 Boechera stricta Bostr.7128s0681 I 0.615
BOTBODRAFT_174219 Botryobasidium botryosum BOTBODRAFT_174219 N 0.457
BOTBODRAFT_182015 Botryobasidium botryosum BOTBODRAFT_182015 N 0.477
BRADI1G55550 Brachypodium distachyon BRADI1G55550 I 0.726
BRADI3G53270 Brachypodium distachyon BRADI3G53270 I 0.741
Bo5g030830 Brassica oleracea Bo5g030830 I 0.556
Bo6g120610 Brassica oleracea Bo6g120610 I 0.687
Bo7g014510 Brassica oleracea Bo7g014510 I 0.551
Bo7g061260 Brassica oleracea Bo7g061260 I 0.591
Bo8g070520 Brassica oleracea Bo8g070520 I 0.556
Bo9g024490 Brassica oleracea Bo9g024490 I 0.724
Bra002058 Brassica rapa Bra002058 I 0.739
Bra012257 Brassica rapa Bra012257 I 0.591
Bra015737 Brassica rapa Bra015737 N 0.635
Bra016443 Brassica rapa Bra016443 I 0.556
Bra025855 Brassica rapa Bra025855 I 0.556
Bra037275 Brassica rapa Bra037275 I 0.724
ENSCJAG00000034027 Callithrix jacchus ENSCJAG00000034027 N 0.527
Aan_R005479 Calypte anna Aan_R005479 N 0.443
Cflo_11029--XP_001120115.1_APIME Camponotus floridanus Cflo_11029--XP_001120115.1_APIME N 0.490
PK02181.1 Cannabis sativa PK02181.1 I 0.705
PK12537.1 Cannabis sativa PK12537.1 I 0.785
Cagra.2281s0033 Capsella grandiflora Cagra.2281s0033 I 0.705
Cagra.6160s0006 Capsella grandiflora Cagra.6160s0006 I 0.615
Cagra.6788s0003 Capsella grandiflora Cagra.6788s0003 I 0.747
Carubv10009301m.g Capsella rubella Carubv10009301m.g I 0.615
Carubv10012979m.g Capsella rubella Carubv10012979m.g I 0.747
Carubv10020299m.g Capsella rubella Carubv10020299m.g I 0.705
evm.TU.supercontig_26.2 Carica papaya evm.TU.supercontig_26.2 I 0.705
evm.TU.supercontig_70.18 Carica papaya evm.TU.supercontig_70.18 N 0.715
GG.C169_S05_00378 Chlorella vulgaris GG.C169_S05_00378 N 0.463
Ca_04797 Cicer arietinum Ca_04797 I 0.718
Ca_10698 Cicer arietinum Ca_10698 I 0.785
ENSCSAVG00000005880 Ciona savignyi ENSCSAVG00000005880 N 0.552
Cla009111 Citrullus lanatus Cla009111 I 0.785
Ciclev10001099m.g Citrus clementina Ciclev10001099m.g I 0.718
Ciclev10025351m.g Citrus clementina Ciclev10025351m.g I 0.785
Ciclev10030351m.g Citrus clementina Ciclev10030351m.g I 0.705
orange1.1g004663m.g Citrus sinensis orange1.1g004663m.g I 0.705
orange1.1g012780m.g Citrus sinensis orange1.1g012780m.g I 0.718
Genemark1.2983_g Coccomyxa subellipsoidea C169 Genemark1.2983_g N 0.527
Cucsa.323280 Cucumis sativus Cucsa.323280 I 0.785
YQE_11989 Dendroctonus ponderosae YQE_11989 N 0.468
GL12242 Drosophila persimilis FBgn0149849 N 0.540
GD20218 Drosophila simulans FBgn0191696 N 0.577
GK21672 Drosophila willistoni FBgn0223657 N 0.482
Eucgr.F01815 Eucalyptus grandis Eucgr.F01815 I 0.718
Eucgr.I01546 Eucalyptus grandis Eucgr.I01546 I 0.696
Eucgr.I02198 Eucalyptus grandis Eucgr.I02198 I 0.785
Thhalv10007750m.g Eutrema salsugineum Thhalv10007750m.g I 0.629
Thhalv10018578m.g Eutrema salsugineum Thhalv10018578m.g I 0.705
Thhalv10022553m.g Eutrema salsugineum Thhalv10022553m.g I 0.747
gene11760-v1.0-hybrid Fragaria vesca gene11760-v1.0-hybrid N 0.622
gene12982-v1.0-hybrid Fragaria vesca gene12982-v1.0-hybrid I 0.485
gene17116-v1.0-hybrid Fragaria vesca gene17116-v1.0-hybrid I 0.681
GLYMA01G36040 Glycine max GLYMA01G36040 I 0.785
GLYMA04G01560 Glycine max GLYMA04G01560 I 0.718
GLYMA05G10756 Glycine max GLYMA05G10756 I 0.673
GLYMA06G01640 Glycine max GLYMA06G01640 I 0.718
GLYMA09G32820 Glycine max GLYMA09G32820 I 0.741
GLYMA11G09370 Glycine max GLYMA11G09370 I 0.785
GLYMA16G21840 Glycine max GLYMA16G21840 I 0.709
Gorai.002G112400 Gossypium raimondii Gorai.002G112400 I 0.718
Gorai.003G000800 Gossypium raimondii Gorai.003G000800 I 0.785
Gorai.012G137700 Gossypium raimondii Gorai.012G137700 I 0.705
HCOI00647600 Haemonchus contortus HCOI00647600 N 0.468
HHAL003716-PA Halyomorpha halys HHAL003716-PA N 0.538
Hsal_11763--XP_001120115.1_APIME Harpegnathos saltator Hsal_11763--XP_001120115.1_APIME N 0.468
HPBE_0000220801 Heligmosomoides bakeri HPBE_0000220801 N 0.457
Genemark.397_g Heterobasidion annosum Genemark.397_g N 0.463
MLOC_7381 Hordeum vulgare MLOC_7381 N 0.655
LPERR02G24480 Leersia perrieri LPERR02G24480 I 0.728
LPERR06G17780 Leersia perrieri LPERR06G17780 I 0.585
Lus10001618.g Linum usitatissimum Lus10001618.g I 0.718
Lus10008531.g Linum usitatissimum Lus10008531.g N 0.433
Lus10016045.g Linum usitatissimum Lus10016045.g I 0.672
Lus10022981.g Linum usitatissimum Lus10022981.g I 0.718
chr1.CM0150.370.nc Lotus japonicus chr1.CM0150.370.nc I 0.718
MDP0000188323 Malus domestica MDP0000188323 I 0.785
MDP0000834789 Malus domestica MDP0000834789 I 0.785
MDP0000890776 Malus domestica MDP0000890776 I 0.705
cassava10018.m1 Manihot esculenta cassava10018.m1 I 0.488
cassava23401.valid.m1 Manihot esculenta cassava23401.valid.m1 I 0.762
cassava24840.valid.m1 Manihot esculenta cassava24840.valid.m1 I 0.762
cassava27165.m1 Manihot esculenta cassava27165.m1 I 0.718
cassava32082.m1 Manihot esculenta cassava32082.m1 N 0.433
cassava33852.m1 Manihot esculenta cassava33852.m1 N 0.433
MTR_3g116200 Medicago truncatula MTR_3g116200 I 0.718
MTR_5g024920 Medicago truncatula MTR_5g024920 I 0.705
MESCA003685 Megaselia scalaris MESCA003685 N 0.540
MCINX010724 Melitaea cinxia MCINX010724 N 0.468
ARID5A Microcebus murinus ENSMICG00000001964 I 0.443
mg023226m Mimulus guttatus mg023226m I 0.689
mgf001698m Mimulus guttatus mgf001698m I 0.718
mgf002691m Mimulus guttatus mgf002691m I 0.718
mgf005009m Mimulus guttatus mgf005009m I 0.678
mgf014392m Mimulus guttatus mgf014392m I 0.689
e_gw1.8.356.1 Monosiga brevicollis e_gw1.8.356.1 N 0.492
GSMUA_Achr3G11660_001 Musa acuminata GSMUA_Achr3G11660_001 I 0.590
GSMUA_Achr4G19240_001 Musa acuminata GSMUA_Achr4G19240_001 I 0.651
GSMUA_AchrUn_randomG12940_001 Musa acuminata GSMUA_AchrUn_randomG12940_001 I 0.747
Myotis_brandtii_ARID2_10029491 Myotis brandtii Myotis_brandtii_ARID2_10029491 N 0.447
Myotis_brandtii_Arid3c_10010321 Myotis brandtii Myotis_brandtii_Arid3c_10010321 N 0.433
NV31651 Nasonia vitripennis NV31651 N 0.433
OESDEN_17751 Oesophagostomum dentatum OESDEN_17751 N 0.468
OFLC_0000209301 Onchocerca flexuosa OFLC_0000209301 N 0.427
OBART02G30070 Oryza barthii OBART02G30070 I 0.741
OBART06G21220 Oryza barthii OBART06G21220 I 0.712
OB02G37240 Oryza brachyantha OB02G37240 I 0.741
OB06G29250 Oryza brachyantha OB06G29250 I 0.762
ORGLA02G0256100 Oryza glaberrima ORGLA02G0256100 I 0.741
ORGLA07G0233500 Oryza glaberrima ORGLA07G0233500 N 0.692
OGLUM02G30740 Oryza glumaepatula OGLUM02G30740 I 0.741
OGLUM06G22430 Oryza glumaepatula OGLUM06G22430 I 0.712
BGIOSGA005739 Oryza indica BGIOSGA005739 I 0.741
BGIOSGA023283 Oryza indica BGIOSGA023283 I 0.762
OLONG_022248 Oryza longistaminata OLONG_022248 I 0.712
OMERI01G31330 Oryza meridionalis OMERI01G31330 I 0.712
OMERI02G28920 Oryza meridionalis OMERI02G28920 I 0.741
ONIVA02G32840 Oryza nivara ONIVA02G32840 I 0.741
ONIVA06G25180 Oryza nivara ONIVA06G25180 I 0.712
OPUNC02G27630 Oryza punctata OPUNC02G27630 I 0.741
OPUNC06G19340 Oryza punctata OPUNC06G19340 I 0.572
ORUFI02G31730 Oryza rufipogon ORUFI02G31730 I 0.741
ORUFI06G22870 Oryza rufipogon ORUFI06G22870 I 0.712
OS02G0714300 Oryza sativa OS02G0714300 I 0.741
OS06G0622300 Oryza sativa OS06G0622300 I 0.762
Pavir.Aa00633 Panicum virgatum Pavir.Aa00633 I 0.741
Pavir.Ab03084 Panicum virgatum Pavir.Ab03084 I 0.741
Pavir.Da00612 Panicum virgatum Pavir.Da00612 N 0.615
Pavir.Db00824 Panicum virgatum Pavir.Db00824 I 0.762
Pavir.J25952 Panicum virgatum Pavir.J25952 N 0.692
PHUM027610 Pediculus humanus PHUM027610 N 0.533
PHACADRAFT_251691 Phanerochaete carnosa PHACADRAFT_251691 N 0.466
PDK_20s1315201g001 Phoenix dactylifera PDK_20s1315201g001 I 0.721
PDK_20s1315202g001 Phoenix dactylifera PDK_20s1315202g001 N 0.692
PDK_20s1326081g004 Phoenix dactylifera PDK_20s1326081g004 I 0.741
PDK_20s1490591g001 Phoenix dactylifera PDK_20s1490591g001 N 0.450
e_gw1.66.61.1 Physcomitrella patens e_gw1.66.61.1 I 0.649
gw1.131.40.1 Physcomitrella patens gw1.131.40.1 I 0.609
POPTR_0001s46070 Populus trichocarpa POPTR_0001s46070 I 0.628
POPTR_0002s00550 Populus trichocarpa POPTR_0002s00550 I 0.718
POPTR_0004s21870 Populus trichocarpa POPTR_0004s21870 I 0.718
POPTR_0011s14850 Populus trichocarpa POPTR_0011s14850 I 0.663
Pm020703 Prunus mume Pm020703 I 0.705
Pm022898 Prunus mume Pm022898 I 0.705
Pm026967 Prunus mume Pm026967 I 0.785
PRUPE_ppa001071mg Prunus persica PRUPE_ppa001071mg I 0.705
PRUPE_ppa003469mg Prunus persica PRUPE_ppa003469mg I 0.785
PRUPE_ppa006712mg Prunus persica PRUPE_ppa006712mg I 0.705
29682.m000576 Ricinus communis 29682.m000576 I 0.762
30162.m001290 Ricinus communis 30162.m001290 I 0.705
30170.m013806 Ricinus communis 30170.m013806 I 0.718
SapurV1A.0016s0160 Salix purpurea SapurV1A.0016s0160 I 0.718
SapurV1A.0047s0480 Salix purpurea SapurV1A.0047s0480 I 0.663
SapurV1A.0216s0430 Salix purpurea SapurV1A.0216s0430 N 0.542
SapurV1A.0478s0090 Salix purpurea SapurV1A.0478s0090 I 0.628
SapurV1A.0554s0250 Salix purpurea SapurV1A.0554s0250 I 0.718
SapurV1A.2929s0030 Salix purpurea SapurV1A.2929s0030 N 0.542
Sjc_0111140 Schistosoma japonicum Sjc_0111140 N 0.527
SMTD_0000131801 Schistosoma mattheei SMTD_0000131801 N 0.550
SMTD_0001549501 Schistosoma mattheei SMTD_0001549501 N 0.481
SROB_0001561301 Schistosoma rodhaini SROB_0001561301 N 0.527
SELMODRAFT_271464 Selaginella moellendorffii SELMODRAFT_271464 I 0.649
SELMODRAFT_445202 Selaginella moellendorffii SELMODRAFT_445202 I 0.649
Si006372m.g Setaria italica Si006372m.g I 0.762
Si017073m.g Setaria italica Si017073m.g I 0.741
SBAD_0000429301 Soboliphyme baturini SBAD_0000429301 N 0.527
Solyc04g025930.1 Solanum lycopersicum Solyc04g025930.1 N 0.480
Solyc04g082820.2 Solanum lycopersicum Solyc04g082820.2 I 0.718
Solyc12g038740.1 Solanum lycopersicum Solyc12g038740.1 N 0.499
Solyc12g094730.1 Solanum lycopersicum Solyc12g094730.1 I 0.627
PGSC0003DMG400010001 Solanum tuberosum PGSC0003DMG400010001 I 0.718
PGSC0003DMG400021771 Solanum tuberosum PGSC0003DMG400021771 I 0.617
PGSC0003DMG400047019 Solanum tuberosum PGSC0003DMG400047019 N 0.589
PGSC0003DMG401018896 Solanum tuberosum PGSC0003DMG401018896 N 0.500
ARID5A Sorex araneus ENSSARG00000003004 I 0.443
Sb04g029990 Sorghum bicolor Sb04g029990 I 0.741
Sb10g024400 Sorghum bicolor Sb10g024400 I 0.762
SPER_0000246801 Spirometra erinaceieuropaei SPER_0000246801 N 0.527
SPER_0000445801 Spirometra erinaceieuropaei SPER_0000445801 N 0.433
SPER_0003392901 Spirometra erinaceieuropaei SPER_0003392901 N 0.527
SPER_0003827801 Spirometra erinaceieuropaei SPER_0003827801 N 0.527
SPU_003500 Strongylocentrotus purpuratus SPU_003500 N 0.527
SPU_009801 Strongylocentrotus purpuratus SPU_009801 N 0.471
SVUK_0000804601 Strongylus vulgaris SVUK_0000804601 N 0.505
TCM_000019 Theobroma cacao TCM_000019 I 0.482
TCM_007605 Theobroma cacao TCM_007605 I 0.705
TCM_034809 Theobroma cacao TCM_034809 I 0.718
TRE_0000846701 Trichobilharzia regenti TRE_0000846701 N 0.481
Traes_2AS_40ED2C7BC Triticum aestivum Traes_2AS_40ED2C7BC N 0.586
Traes_2AS_49D6010DA1 Triticum aestivum Traes_2AS_49D6010DA1 I 0.724
Traes_2BS_B3411790F Triticum aestivum Traes_2BS_B3411790F I 0.724
Traes_2DL_C465ACBE4 Triticum aestivum Traes_2DL_C465ACBE4 I 0.724
Traes_6AL_D304A3C3B Triticum aestivum Traes_6AL_D304A3C3B I 0.741
Traes_6BL_936B5B999 Triticum aestivum Traes_6BL_936B5B999 I 0.741
Traes_6DL_E6E385C31 Triticum aestivum Traes_6DL_E6E385C31 I 0.741
TRIUR3_29596 Triticum urartu TRIUR3_29596 N 0.655
TRIUR3_34317 Triticum urartu TRIUR3_34317 I 0.741
ARID5B Tursiops truncatus ENSTTRG00000009968 N 0.435
VIT_04s0044g01840 Vitis vinifera VIT_04s0044g01840 I 0.762
VIT_18s0122g00560 Vitis vinifera VIT_18s0122g00560 I 0.705
GRMZM2G110109 Zea mays GRMZM2G110109 I 0.741
GRMZM2G180654 Zea mays GRMZM2G180654 I 0.762
GRMZM2G421899 Zea mays GRMZM2G421899 I 0.741
GRMZM5G883993 Zea mays GRMZM5G883993 I 0.762