CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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VIT_01s0011g06380
(
Vitis vinifera
)
BBR
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF06217 (GAGA_bind)
IPR010409
VIT_01s0011g06380
T024767_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
VIT_01s0011g06380.t01
BBR
15
307
MDDDGGLNMRNWGYYEPAFKGHLNLQLMSSVAERDTKPFLPGRDSPLMVSANGAFHPRDCMVSEAPVHMDYVRDSWINQRDKFLNILPGNSNFQVLPEAPLGKEKFYHSTEAHPMQIIQQPEPSKDERVGRMEDSDLKKEGGPLKKRTGGGAPKTPKIRKTKKGPSVPKDGTNSSVQRVKPAKKNMDVVINGIDMDISGIPIPVCSCTGNPQQCYRWGCGGWQSACCTTSISMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRRHWAKHGTNKFVTIR
Links
Other
BBR
family TFs
Other
Vitis vinifera
TFs
13 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
evm.TU.supercontig_2.121
Carica papaya
evm.TU.supercontig_2.121
N
0.719
Ciclev10015354m.g
Citrus clementina
Ciclev10015354m.g
N
0.721
orange1.1g022806m.g
Citrus sinensis
orange1.1g022806m.g
N
0.706
Eucgr.G02067
Eucalyptus grandis
Eucgr.G02067
N
0.722
MDP0000320521
Malus domestica
MDP0000320521
N
0.713
MDP0000826219
Malus domestica
MDP0000826219
N
0.731
cassava18077.valid.m1
Manihot esculenta
cassava18077.valid.m1
N
0.779
cassava18078.valid.m1
Manihot esculenta
cassava18078.valid.m1
N
0.779
cassava39873.m1
Manihot esculenta
cassava39873.m1
N
0.734
Pm005924
Prunus mume
Pm005924
N
0.727
PRUPE_ppa009765mg
Prunus persica
PRUPE_ppa009765mg
N
0.727
29780.m001393
Ricinus communis
29780.m001393
N
0.717
TCM_011212
Theobroma cacao
TCM_011212
N
0.710