CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_2.121
(
Carica papaya
)
BBR
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF06217 (GAGA_bind)
IPR010409
evm.TU.supercontig_2.121
T024851_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_2.121
BBR
1
280
MDDDALNIRNWGYYEPSSFKGNLGLQLMSNMAERNTKPFLPGRDPSLMVGGNGTFHPRDCVVSETPMPMNYAWINQHRDKFFNMIPGNTTNYNVLPETSSAQSMQILQPPPSSSRDERAVGRIEEPVPNKEGAQSKKRQSSGAPKTPKAKKPRKPKDNNNPTVQRVKPVKKSMDVVINGIDMDISGIPIPVCSCTGTPQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR
Links
Other
BBR
family TFs
Other
Carica papaya
TFs
28 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
cassava18077.valid.m1
Manihot esculenta
cassava18077.valid.m1
N
0.812
cassava18078.valid.m1
Manihot esculenta
cassava18078.valid.m1
N
0.812
cassava39873.m1
Manihot esculenta
cassava39873.m1
N
0.807
Pm005924
Prunus mume
Pm005924
N
0.803
TCM_011212
Theobroma cacao
TCM_011212
N
0.799
PRUPE_ppa009765mg
Prunus persica
PRUPE_ppa009765mg
N
0.799
29780.m001393
Ricinus communis
29780.m001393
N
0.792
orange1.1g022806m.g
Citrus sinensis
orange1.1g022806m.g
N
0.792
Gorai.002G171200
Gossypium raimondii
Gorai.002G171200
N
0.777
PK28293.1
Cannabis sativa
PK28293.1
N
0.774
MDP0000826219
Malus domestica
MDP0000826219
N
0.774
Ciclev10015354m.g
Citrus clementina
Ciclev10015354m.g
N
0.770
Cla005911
Citrullus lanatus
Cla005911
N
0.763
MDP0000320521
Malus domestica
MDP0000320521
N
0.755
chr4.CM0387.290.nc
Lotus japonicus
chr4.CM0387.290.nc
N
0.752
POPTR_0010s11180
Populus trichocarpa
POPTR_0010s11180
N
0.752
Eucgr.G02067
Eucalyptus grandis
Eucgr.G02067
N
0.747
gene00620-v1.0-hybrid
Fragaria vesca
gene00620-v1.0-hybrid
N
0.745
GLYMA05G26790
Glycine max
GLYMA05G26790
N
0.745
Cucsa.026600
Cucumis sativus
Cucsa.026600
N
0.741
POPTR_0008s13960
Populus trichocarpa
POPTR_0008s13960
N
0.741
SapurV1A.0015s0840
Salix purpurea
SapurV1A.0015s0840
N
0.734
GLYMA08G09780
Glycine max
GLYMA08G09780
N
0.734
SapurV1A.0055s0040
Salix purpurea
SapurV1A.0055s0040
N
0.730
Gorai.005G154200
Gossypium raimondii
Gorai.005G154200
N
0.730
Gorai.012G183100
Gossypium raimondii
Gorai.012G183100
N
0.726
VIT_01s0011g06380
Vitis vinifera
VIT_01s0011g06380
N
0.719
Lus10040427.g
Linum usitatissimum
Lus10040427.g
N
0.701