POPTR_0008s13960 (Populus trichocarpa)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF06217 (GAGA_bind) IPR010409 POPTR_0008s13960 T024713_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0008s13960.1 BBR 1 279

Links

Other BBR family TFs
Other Populus trichocarpa TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
C1orf35 Otolemur garnettii ENSOGAG00000010978 I 1.000
RGD1304587 Rattus norvegicus ENSRNOG00000002944 I 1.000
SapurV1A.0015s0840 Salix purpurea SapurV1A.0015s0840 N 0.937
POPTR_0010s11180 Populus trichocarpa POPTR_0010s11180 N 0.889
SapurV1A.0055s0040 Salix purpurea SapurV1A.0055s0040 N 0.871
Traes_4BL_011308A76 Triticum aestivum Traes_4BL_011308A76 I 0.838
cassava18077.valid.m1 Manihot esculenta cassava18077.valid.m1 N 0.838
cassava18078.valid.m1 Manihot esculenta cassava18078.valid.m1 N 0.838
cassava39873.m1 Manihot esculenta cassava39873.m1 N 0.834
OMERI10G00680 Oryza meridionalis OMERI10G00680 I 0.833
29780.m001393 Ricinus communis 29780.m001393 N 0.819
Pm005924 Prunus mume Pm005924 N 0.781
PRUPE_ppa009765mg Prunus persica PRUPE_ppa009765mg N 0.778
MDP0000826219 Malus domestica MDP0000826219 N 0.760
MDP0000320521 Malus domestica MDP0000320521 N 0.749
PK28293.1 Cannabis sativa PK28293.1 N 0.747
Ciclev10015354m.g Citrus clementina Ciclev10015354m.g N 0.746
evm.TU.supercontig_2.121 Carica papaya evm.TU.supercontig_2.121 N 0.741
orange1.1g022806m.g Citrus sinensis orange1.1g022806m.g N 0.739
TCM_011212 Theobroma cacao TCM_011212 N 0.734
Gorai.002G171200 Gossypium raimondii Gorai.002G171200 N 0.731
chr4.CM0387.290.nc Lotus japonicus chr4.CM0387.290.nc N 0.731
Eucgr.G02067 Eucalyptus grandis Eucgr.G02067 N 0.729
gene00620-v1.0-hybrid Fragaria vesca gene00620-v1.0-hybrid N 0.723
Cla005911 Citrullus lanatus Cla005911 N 0.721
GLYMA05G26790 Glycine max GLYMA05G26790 N 0.712
GLYMA08G09780 Glycine max GLYMA08G09780 N 0.708
VIT_17s0000g01860 Vitis vinifera VIT_17s0000g01860 N 0.706