Cla002680 (Citrullus lanatus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Cla002680 T046929_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH78
M01713_2.00 		Arabidopsis thaliana
GCACGTGC
GCACGTGC		 PBM
Weirauch et al.(2014)
pTH7666 		0.914 0.922
BPE
M01700_2.00 		Arabidopsis thaliana
NCACGTNNN
NNNACGTGN		 PBM
Weirauch et al.(2014)
pTH7290 		0.901 0.863
BPE
M06726_2.00 		Arabidopsis thaliana
NNNNNNNNCACGTGNNNNNWB
VWNNNNNCACGTGNNNNNNNN		 Dap-seq
OMalley et al.(2016)
bHLH31_col 		0.901 0.863
BHLH49
M01052_2.00 		Arabidopsis thaliana
NNCACGTGCN
NGCACGTGNN		 PBM
Sullivan et al.(2014)
pTH7309 		0.888 0.902
PK06517.1
M01122_2.00 		Cannabis sativa
NCACGTGC
GCACGTGN		 PBM
Lambert et al.(2019)
pTH10104 		0.888 0.902
gw1.270.82.1
M01758_2.00 		Physcomitrella patens
NCACGTGH
DCACGTGN		 PBM
Weirauch et al.(2014)
pTH8457 		0.875 0.902
BHLH74
M06720_2.00 		Arabidopsis thaliana
SDHSDNDNNCACGTGVNNNNW
WNNNNBCACGTGNNHNHSDHS		 Dap-seq
OMalley et al.(2016)
bHLH74_col_a 		0.875 0.863
BHLH74
M06721_2.00 		Arabidopsis thaliana
CACGTGAY
RTCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH74_colamp_a 		0.875 0.863
BHLH77
M06736_2.00 		Arabidopsis thaliana
NKCACGTGVHNWHNB
VNDWNDBCACGTGMN		 Dap-seq
OMalley et al.(2016)
bHLH77_col_a 		0.875 0.843
PK05923.1
M01121_2.00 		Cannabis sativa
NNNNNNN
NNNNNNN		 PBM
Lambert et al.(2019)
pTH11368 		0.868 0.784
BEE2
M01708_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8094 		0.864 0.804
AT2G18300
M01702_2.00 		Arabidopsis thaliana
NBCACGTGCNNN
NNNGCACGTGVN		 PBM
Weirauch et al.(2014)
pTH7289 		0.864 0.784
AT2G18300
M06729_2.00 		Arabidopsis thaliana
ACTGGT
ACCAGT		 Dap-seq
OMalley et al.(2016)
bHLH64_col_a 		0.864 0.784
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla002680 bHLH 173 223

Links

Other bHLH family TFs
Other Citrullus lanatus TFs

884 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00025p00224230 Amborella trichopoda AMTR_s00025p00224230 I 0.000
AMTR_s00022p00190540 Amborella trichopoda AMTR_s00022p00190540 I 0.000
Aquca_009_00165 Aquilegia coerulea Aquca_009_00165 N 0.000
Aquca_012_00204 Aquilegia coerulea Aquca_012_00204 N 0.000
fgenesh2_kg.6__627__AT5G06800.1 Arabidopsis lyrata fgenesh2_kg.6__627__AT5G06800.1 N 0.000
AT5G06800 Arabidopsis thaliana AT5G06800 N 0.000
Bostr.13129s0292 Boechera stricta Bostr.13129s0292 N 0.000
BRADI5G25320 Brachypodium distachyon BRADI5G25320 I 0.000
Bo9g175820 Brassica oleracea Bo9g175820 I 0.000
Bo3g004040 Brassica oleracea Bo3g004040 N 0.000
Bo2g007410 Brassica oleracea Bo2g007410 N 0.000
Bra009228 Brassica rapa Bra009228 I 0.000
Bra028717 Brassica rapa Bra028717 N 0.000
Bra005912 Brassica rapa Bra005912 N 0.000
PK00827.1 Cannabis sativa PK00827.1 N 0.000
Cagra.8005s0016 Capsella grandiflora Cagra.8005s0016 N 0.000
Carubv10003217m.g Capsella rubella Carubv10003217m.g N 0.000
evm.TU.supercontig_85.82 Carica papaya evm.TU.supercontig_85.82 N 0.000
Ca_14198 Cicer arietinum Ca_14198 N 0.000
Ca_07304 Cicer arietinum Ca_07304 I 0.000
Cla011853 Citrullus lanatus Cla011853 N 0.000
Ciclev10033388m.g Citrus clementina Ciclev10033388m.g N 0.000
Ciclev10012014m.g Citrus clementina Ciclev10012014m.g N 0.000
Ciclev10004984m.g Citrus clementina Ciclev10004984m.g I 0.000
orange1.1g014308m.g Citrus sinensis orange1.1g014308m.g I 0.000
orange1.1g035950m.g Citrus sinensis orange1.1g035950m.g N 0.000
orange1.1g018583m.g Citrus sinensis orange1.1g018583m.g N 0.000
Cucsa.353890 Cucumis sativus Cucsa.353890 N 0.000
Eucgr.A00517 Eucalyptus grandis Eucgr.A00517 I 0.000
Eucgr.A02444 Eucalyptus grandis Eucgr.A02444 N 0.000
Thhalv10013850m.g Eutrema salsugineum Thhalv10013850m.g N 0.000
gene22647-v1.0-hybrid Fragaria vesca gene22647-v1.0-hybrid N 0.000
GLYMA03G29940 Glycine max GLYMA03G29940 I 0.000
GLYMA09G17404 Glycine max GLYMA09G17404 N 0.000
GLYMA19G32850 Glycine max GLYMA19G32850 I 0.000
GLYMA02G30800 Glycine max GLYMA02G30800 N 0.000
Gorai.002G225400 Gossypium raimondii Gorai.002G225400 N 0.000
Gorai.006G142000 Gossypium raimondii Gorai.006G142000 N 0.000
MLOC_52271 Hordeum vulgare MLOC_52271 I 0.000
LPERR04G24240 Leersia perrieri LPERR04G24240 I 0.000
Lus10021035.g Linum usitatissimum Lus10021035.g N 0.000
Lus10022886.g Linum usitatissimum Lus10022886.g I 0.000
Lus10023816.g Linum usitatissimum Lus10023816.g N 0.000
chr5.LjT42I01.50.nd Lotus japonicus chr5.LjT42I01.50.nd I 0.000
MDP0000184307 Malus domestica MDP0000184307 N 0.000
MDP0000253656 Malus domestica MDP0000253656 N 0.000
MDP0000280005 Malus domestica MDP0000280005 N 0.000
MDP0000182154 Malus domestica MDP0000182154 I 0.000
MDP0000142146 Malus domestica MDP0000142146 I 0.000
cassava12254.valid.m1 Manihot esculenta cassava12254.valid.m1 N 0.000
cassava12255.valid.m1 Manihot esculenta cassava12255.valid.m1 N 0.000
cassava39743.m1 Manihot esculenta cassava39743.m1 N 0.000
MTR_7g093030 Medicago truncatula MTR_7g093030 N 0.000
MTR_1g053835 Medicago truncatula MTR_1g053835 N 0.000
mgf017208m Mimulus guttatus mgf017208m N 0.000
mgf007985m Mimulus guttatus mgf007985m N 0.000
mgf007532m Mimulus guttatus mgf007532m N 0.000
GSMUA_Achr4G19300_001 Musa acuminata GSMUA_Achr4G19300_001 I 0.000
GSMUA_Achr7G06370_001 Musa acuminata GSMUA_Achr7G06370_001 I 0.000
OBART04G28680 Oryza barthii OBART04G28680 I 0.000
OB04G35670 Oryza brachyantha OB04G35670 I 0.000
ORGLA04G0249600 Oryza glaberrima ORGLA04G0249600 I 0.000
OGLUM04G28560 Oryza glumaepatula OGLUM04G28560 I 0.000
BGIOSGA014151 Oryza indica BGIOSGA014151 I 0.000
OLONG_005000 Oryza longistaminata OLONG_005000 I 0.000
OMERI04G24260 Oryza meridionalis OMERI04G24260 I 0.000
ONIVA04G27220 Oryza nivara ONIVA04G27220 I 0.000
OPUNC04G26200 Oryza punctata OPUNC04G26200 I 0.000
ORUFI04G30350 Oryza rufipogon ORUFI04G30350 I 0.000
OS04G0665600 Oryza sativa OS04G0665600 I 0.000
Pavir.J05593 Panicum virgatum Pavir.J05593 I 0.000
Pavir.Ga00160 Panicum virgatum Pavir.Ga00160 I 0.000
PDK_20s1349221g001 Phoenix dactylifera PDK_20s1349221g001 N 0.000
estExt_fgenesh1_pg.C_4900005 Physcomitrella patens estExt_fgenesh1_pg.C_4900005 I 0.000
POPTR_0001s23560 Populus trichocarpa POPTR_0001s23560 N 0.000
POPTR_0016s04830 Populus trichocarpa POPTR_0016s04830 N 0.000
POPTR_0006s20540 Populus trichocarpa POPTR_0006s20540 N 0.000
Pm025973 Prunus mume Pm025973 N 0.000
PRUPE_ppa016067mg Prunus persica PRUPE_ppa016067mg N 0.000
28582.m000318 Ricinus communis 28582.m000318 N 0.000
28582.m000316 Ricinus communis 28582.m000316 N 0.000
SapurV1A.0008s0360 Salix purpurea SapurV1A.0008s0360 N 0.000
SapurV1A.0018s0530 Salix purpurea SapurV1A.0018s0530 N 0.000
SapurV1A.0251s0040 Salix purpurea SapurV1A.0251s0040 N 0.000
SapurV1A.4156s0010 Salix purpurea SapurV1A.4156s0010 N 0.000
Si022099m.g Setaria italica Si022099m.g I 0.000
Solyc10g078720.1 Solanum lycopersicum Solyc10g078720.1 N 0.000
PGSC0003DMG400011435 Solanum tuberosum PGSC0003DMG400011435 N 0.000
Sb06g031970 Sorghum bicolor Sb06g031970 I 0.000
TCM_024886 Theobroma cacao TCM_024886 N 0.000
Traes_6BL_5D8EE6802 Triticum aestivum Traes_6BL_5D8EE6802 I 0.000
TRIUR3_02291 Triticum urartu TRIUR3_02291 I 0.000
VIT_08s0007g06180 Vitis vinifera VIT_08s0007g06180 I 0.000
VIT_08s0007g06310 Vitis vinifera VIT_08s0007g06310 I 0.000
GRMZM2G035370 Zea mays GRMZM2G035370 I 0.000
GRMZM2G124495 Zea mays GRMZM2G124495 I 0.000