Pavir.J01306 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.J01306 T050854_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G42280
M06733_2.00 		Arabidopsis thaliana
DNCMACTTGYH
DRCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH130_col_a 		0.858 0.843
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J01306.1.p bHLH 282 332

Links

Other bHLH family TFs
Other Panicum virgatum TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_26506 Aegilops tauschii F775_26506 I 0.854
F775_24576 Aegilops tauschii F775_24576 I 0.869
scaffold_403077.1 Arabidopsis lyrata scaffold_403077.1 I 0.858
fgenesh2_kg.1__542__AT1G05805.1 Arabidopsis lyrata fgenesh2_kg.1__542__AT1G05805.1 I 0.854
AT2G42280 Arabidopsis thaliana AT2G42280 D 0.858
BHLH128 Arabidopsis thaliana AT1G05805 I 0.854
Bostr.25219s0385 Boechera stricta Bostr.25219s0385 I 0.854
BRADI2G57800 Brachypodium distachyon BRADI2G57800 I 0.869
BRADI3G48070 Brachypodium distachyon BRADI3G48070 I 0.854
Bo5g007030 Brassica oleracea Bo5g007030 I 0.857
Bo5g006980 Brassica oleracea Bo5g006980 I 0.857
Bra015456 Brassica rapa Bra015456 I 0.857
Cagra.1671s0210 Capsella grandiflora Cagra.1671s0210 I 0.854
Cagra.2636s0012 Capsella grandiflora Cagra.2636s0012 I 0.858
Carubv10009382m.g Capsella rubella Carubv10009382m.g I 0.854
Carubv10023498m.g Capsella rubella Carubv10023498m.g I 0.858
Ca_14007 Cicer arietinum Ca_14007 I 0.854
Ca_07284 Cicer arietinum Ca_07284 I 0.846
Ciclev10020681m.g Citrus clementina Ciclev10020681m.g I 0.854
orange1.1g038558m.g Citrus sinensis orange1.1g038558m.g I 0.854
Cucsa.094340 Cucumis sativus Cucsa.094340 I 0.854
Eucgr.A00213 Eucalyptus grandis Eucgr.A00213 I 0.857
Thhalv10008050m.g Eutrema salsugineum Thhalv10008050m.g I 0.854
MLOC_12058 Hordeum vulgare MLOC_12058 I 0.854
MLOC_20318 Hordeum vulgare MLOC_20318 I 0.869
LPERR09G10800 Leersia perrieri LPERR09G10800 I 0.858
LPERR04G13560 Leersia perrieri LPERR04G13560 I 0.854
LPERR01G35240 Leersia perrieri LPERR01G35240 I 0.869
LPERR08G16800 Leersia perrieri LPERR08G16800 I 0.858
Lus10025518.g Linum usitatissimum Lus10025518.g I 0.857
Lus10026733.g Linum usitatissimum Lus10026733.g I 0.857
MDP0000307685 Malus domestica MDP0000307685 I 0.858
MTR_1g116790 Medicago truncatula MTR_1g116790 I 0.854
GSMUA_Achr8G32130_001 Musa acuminata GSMUA_Achr8G32130_001 I 0.866
GSMUA_Achr8G01370_001 Musa acuminata GSMUA_Achr8G01370_001 I 0.866
GSMUA_Achr1G27710_001 Musa acuminata GSMUA_Achr1G27710_001 I 0.866
OBART04G16900 Oryza barthii OBART04G16900 I 0.854
OBART01G40680 Oryza barthii OBART01G40680 I 0.869
OB01G49420 Oryza brachyantha OB01G49420 I 0.869
OB04G24170 Oryza brachyantha OB04G24170 I 0.854
ORGLA01G0346300 Oryza glaberrima ORGLA01G0346300 I 0.869
ORGLA04G0140000 Oryza glaberrima ORGLA04G0140000 I 0.854
OGLUM01G44860 Oryza glumaepatula OGLUM01G44860 I 0.869
OGLUM04G16920 Oryza glumaepatula OGLUM04G16920 I 0.854
BGIOSGA004992 Oryza indica BGIOSGA004992 I 0.869
BGIOSGA016651 Oryza indica BGIOSGA016651 I 0.854
OLONG_004619 Oryza longistaminata OLONG_004619 I 0.869
OMERI01G37660 Oryza meridionalis OMERI01G37660 I 0.869
OMERI04G14260 Oryza meridionalis OMERI04G14260 I 0.854
ONIVA04G15000 Oryza nivara ONIVA04G15000 I 0.854
ONIVA01G45730 Oryza nivara ONIVA01G45730 I 0.869
OPUNC04G14700 Oryza punctata OPUNC04G14700 I 0.854
OPUNC01G39450 Oryza punctata OPUNC01G39450 I 0.869
ORUFI04G18350 Oryza rufipogon ORUFI04G18350 I 0.854
ORUFI01G44010 Oryza rufipogon ORUFI01G44010 I 0.869
OS01G0900800 Oryza sativa OS01G0900800 I 0.869
OS04G0489600 Oryza sativa OS04G0489600 I 0.854
PDK_20s1546591g001 Phoenix dactylifera PDK_20s1546591g001 I 0.857
POPTR_0003s22290 Populus trichocarpa POPTR_0003s22290 I 0.858
30169.m006403 Ricinus communis 30169.m006403 I 0.858
SapurV1A.0009s0400 Salix purpurea SapurV1A.0009s0400 I 0.858
Si001123m.g Setaria italica Si001123m.g I 0.914
Sb03g042860 Sorghum bicolor Sb03g042860 I 0.914
Traes_6DL_62A15AED6 Triticum aestivum Traes_6DL_62A15AED6 I 0.854
Traes_6BL_868408DFC Triticum aestivum Traes_6BL_868408DFC I 0.854
Traes_6AL_9437F730F Triticum aestivum Traes_6AL_9437F730F I 0.854
TRAES3BF135900010CFD_g Triticum aestivum TRAES3BF135900010CFD_g I 0.869
Traes_3AL_B68C491B0 Triticum aestivum Traes_3AL_B68C491B0 I 0.869
TRIUR3_33816 Triticum urartu TRIUR3_33816 I 0.869
TRIUR3_16394 Triticum urartu TRIUR3_16394 I 0.854
VIT_06s0004g01740 Vitis vinifera VIT_06s0004g01740 I 0.858
GRMZM2G114873 Zea mays GRMZM2G114873 I 0.914