XBP1 (Tetraodon nigroviridis)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00170 (bZIP_1) IPR011616 ENSTNIG00000015621 T061624_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
XBP1
M02825_2.00 		Homo sapiens
GVTGACGTCABB
VVTGACGTCABC		 SELEX
Jolma et al.(2013)
XBP1_1 		0.849 0.797
XBP1
M02826_2.00 		Homo sapiens
GVTGACGTGKCVHW
WDBGMCACGTCABC		 SELEX
Jolma et al.(2013)
XBP1_2 		0.849 0.797
XBP1
M02730_2.00 		Homo sapiens
GACGTGKCNNW
WNNGMCACGTC		 SELEX
Jolma et al.(2010)
XBP1_monomer 		0.849 0.797
XBP1
M04231_2.00 		Homo sapiens
NVTGACGTGKNN
NNMCACGTCABN		 SELEX
Yin et al.(2017)
XBP1_FL_HT-SELEX_1 		0.849 0.797
XBP1
M04232_2.00 		Homo sapiens
NVTKACGTMABV
BVTKACGTMABN		 SELEX
Yin et al.(2017)
XBP1_FL_HT-SELEX_2 		0.849 0.797
XBP1
M04010_2.00 		Homo sapiens
GRTGACGTGKCV
BGMCACGTCAYC		 SELEX
Rodriguez-Martinez et al.(2017)
XBP1.1 		0.849 0.797
XBP1
M04011_2.00 		Homo sapiens
GRTGACGTCAYS
SRTGACGTCAYC		 SELEX
Rodriguez-Martinez et al.(2017)
XBP1.2 		0.849 0.797
XBP1
M04012_2.00 		Homo sapiens
KGMCACGTGKMCH
DGKMCACGTGKCM		 SELEX
Rodriguez-Martinez et al.(2017)
XBP1.3 		0.849 0.797
XBP1
M09932_2.00 		Homo sapiens
NHNWDHRVTGACGTGKHNHWDDHB
VDHHWDNDMCACGTCABYDHWNDN		 Transfac
Matys et al.(2006)
V$HTF_01 		0.849 0.797
XBP1
M09933_2.00 		Homo sapiens
DBRHTKACGTGKHNHWD
HWDNDMCACGTMADYVH		 Transfac
Matys et al.(2006)
V$XBP1_01 		0.849 0.797
XBP1
M04233_2.00 		Homo sapiens
BKMCACRTCAYS
SRTGAYGTGKMV		 SELEX
Yin et al.(2017)
XBP1_FL_Methyl-HT-SELEX_1 		0.849 0.797
XBP1
M04234_2.00 		Homo sapiens
VVTGWCRTCAYS
SRTGAYGWCABB		 SELEX
Yin et al.(2017)
XBP1_FL_Methyl-HT-SELEX_2 		0.849 0.797
Xbp1
M00757_2.00 		Mus musculus
NNHBAYDNNN
NNNHRTVDNN		 PBM
Weirauch et al.(2013)
pTH2852 		0.849 0.781
Xbp1
M01802_2.00 		Mus musculus
NHNACGYNN
NNRCGTNDN		 PBM
Weirauch et al.(2014)
pTH5019 		0.849 0.781
Xbp1
M08818_2.00 		Mus musculus
GACGTGKCMHWD
HWDKGMCACGTC		 Misc
Kulakovskiy et al.(2013)
XBP1_MOUSE.H11MO.0.C 		0.849 0.781
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000018695 bZIP 67 130

Links

Other bZIP family TFs
Other Tetraodon nigroviridis TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_05862 Aegilops tauschii F775_05862 N
AMTR_s00024p00216510 Amborella trichopoda AMTR_s00024p00216510 N
AMTR_s00009p00103030 Amborella trichopoda AMTR_s00009p00103030 N
Aquca_076_00106 Aquilegia coerulea Aquca_076_00106 N
TRFL6 Arabidopsis lyrata fgenesh2_kg.2__1530__AT1G72650.2 N
TRFL6 Arabidopsis thaliana AT1G72650 N
Bostr.7128s0357 Boechera stricta Bostr.7128s0357 N
Bostr.10273s0086 Boechera stricta Bostr.10273s0086 N
BRADI3G57300 Brachypodium distachyon BRADI3G57300 N
Bo6g091360 Brassica oleracea Bo6g091360 N
Bra003870 Brassica rapa Bra003870 N
Bra003871 Brassica rapa Bra003871 N
Bra016044 Brassica rapa Bra016044 N
PK02666.1 Cannabis sativa PK02666.1 N
Cagra.1013s0036 Capsella grandiflora Cagra.1013s0036 N
Cagra.0824s0115 Capsella grandiflora Cagra.0824s0115 N
Carubv10012426m.g Capsella rubella Carubv10012426m.g N
Carubv10019876m.g Capsella rubella Carubv10019876m.g N
evm.TU.supercontig_25.106 Carica papaya evm.TU.supercontig_25.106 N
Ca_10028 Cicer arietinum Ca_10028 N
Cla015802 Citrullus lanatus Cla015802 N
Ciclev10025094m.g Citrus clementina Ciclev10025094m.g N
orange1.1g006062m.g Citrus sinensis orange1.1g006062m.g N
Cucsa.360310 Cucumis sativus Cucsa.360310 N
Eucgr.J02823 Eucalyptus grandis Eucgr.J02823 N
Thhalv10018282m.g Eutrema salsugineum Thhalv10018282m.g N
Thhalv10007199m.g Eutrema salsugineum Thhalv10007199m.g N
GLYMA07G04160 Glycine max GLYMA07G04160 N
GLYMA16G00870 Glycine max GLYMA16G00870 N
Gorai.011G058300 Gossypium raimondii Gorai.011G058300 N
MLOC_56874 Hordeum vulgare MLOC_56874 N
LPERR02G28410 Leersia perrieri LPERR02G28410 N
Lus10015664.g Linum usitatissimum Lus10015664.g N
Lus10037678.g Linum usitatissimum Lus10037678.g N
cassava159.valid.m1 Manihot esculenta cassava159.valid.m1 N
cassava31568.valid.m1 Manihot esculenta cassava31568.valid.m1 N
GSMUA_Achr5G24660_001 Musa acuminata GSMUA_Achr5G24660_001 N
OBART02G34530 Oryza barthii OBART02G34530 N
OB02G41350 Oryza brachyantha OB02G41350 N
ORGLA02G0298600 Oryza glaberrima ORGLA02G0298600 N
OGLUM02G35670 Oryza glumaepatula OGLUM02G35670 N
BGIOSGA009134 Oryza indica BGIOSGA009134 N
ONIVA02G36570 Oryza nivara ONIVA02G36570 N
ORUFI02G36040 Oryza rufipogon ORUFI02G36040 N
OS02G0776700 Oryza sativa OS02G0776700 N
Pavir.Aa00316 Panicum virgatum Pavir.Aa00316 N
PDK_20s1505221g001 Phoenix dactylifera PDK_20s1505221g001 N
POPTR_0003s06240 Populus trichocarpa POPTR_0003s06240 N
POPTR_0001s17020 Populus trichocarpa POPTR_0001s17020 N
29706.m001295 Ricinus communis 29706.m001295 N
SapurV1A.0002s0820 Salix purpurea SapurV1A.0002s0820 N
SapurV1A.0177s0370 Salix purpurea SapurV1A.0177s0370 N
SapurV1A.5380s0010 Salix purpurea SapurV1A.5380s0010 N
Si016649m.g Setaria italica Si016649m.g N
Solyc03g121990.2 Solanum lycopersicum Solyc03g121990.2 N
PGSC0003DMG400002481 Solanum tuberosum PGSC0003DMG400002481 N
Sb04g034770 Sorghum bicolor Sb04g034770 N
TCM_029115 Theobroma cacao TCM_029115 N
Traes_3DL_A631E1F0C Triticum aestivum Traes_3DL_A631E1F0C N
TRAES3BF079700090CFD_g Triticum aestivum TRAES3BF079700090CFD_g N
Traes_3AL_B71F3F028 Triticum aestivum Traes_3AL_B71F3F028 N
TRIUR3_15439 Triticum urartu TRIUR3_15439 N
VIT_09s0002g01480 Vitis vinifera VIT_09s0002g01480 N
GRMZM2G049194 Zea mays GRMZM2G049194 N