atf3 (Xenopus tropicalis)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 XB-GENE-6085251 T073070_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Atf3
M00758_2.00 		Mus musculus
NNRTKAYNN
NNRTMAYNN		 PBM
Weirauch et al.(2013)
pTH2684 		0.911 0.903
Atf3
M01807_2.00 		Mus musculus
GATGACGY
RCGTCATC		 PBM
Weirauch et al.(2014)
pTH5018 		0.911 0.903
Atf3
M08825_2.00 		Mus musculus
VTGACTCAB
VTGAGTCAB		 Misc
Kulakovskiy et al.(2013)
ATF3_MOUSE.H11MO.0.A 		0.911 0.903
JDP2
M02836_2.00 		Homo sapiens
ATGASTCAT
ATGASTCAT		 SELEX
Jolma et al.(2013)
JDP2_1 		0.873 0.726
JDP2
M02837_2.00 		Homo sapiens
NRTGACGTCATB
VATGACGTCAYN		 SELEX
Jolma et al.(2013)
JDP2_2 		0.873 0.726
JDP2
M02838_2.00 		Homo sapiens
ATGASTCAT
ATGASTCAT		 SELEX
Jolma et al.(2013)
JDP2_3 		0.873 0.726
JDP2
M02839_2.00 		Homo sapiens
NRTGACGTCATN
NATGACGTCAYN		 SELEX
Jolma et al.(2013)
JDP2_4 		0.873 0.726
JDP2
M04285_2.00 		Homo sapiens
NATGASTCATV
BATGASTCATN		 SELEX
Yin et al.(2017)
JDP2_eDBD_HT-SELEX_1 		0.873 0.726
JDP2
M04286_2.00 		Homo sapiens
NRTGACGTCAYN
NRTGACGTCAYN		 SELEX
Yin et al.(2017)
JDP2_eDBD_HT-SELEX_2 		0.873 0.726
JDP2
M04289_2.00 		Homo sapiens
NRTGMSKCAYN
NRTGMSKCAYN		 SELEX
Yin et al.(2017)
JDP2_FL_HT-SELEX_1 		0.873 0.726
JDP2
M04290_2.00 		Homo sapiens
NRTKACRTMAYN
NRTKAYGTMAYN		 SELEX
Yin et al.(2017)
JDP2_FL_HT-SELEX_2 		0.873 0.726
JDP2
M04287_2.00 		Homo sapiens
BATGASTCAYN
NRTGASTCATV		 SELEX
Yin et al.(2017)
JDP2_eDBD_Methyl-HT-SELEX_1 		0.873 0.726
JDP2
M04288_2.00 		Homo sapiens
NRTGACRTCAYN
NRTGAYGTCAYN		 SELEX
Yin et al.(2017)
JDP2_eDBD_Methyl-HT-SELEX_2 		0.873 0.726
JDP2
M04291_2.00 		Homo sapiens
NRTGASTCAYN
NRTGASTCAYN		 SELEX
Yin et al.(2017)
JDP2_FL_Methyl-HT-SELEX_1 		0.873 0.726
JDP2
M04292_2.00 		Homo sapiens
NVTKACRTCAYN
NRTGAYGTMABN		 SELEX
Yin et al.(2017)
JDP2_FL_Methyl-HT-SELEX_2 		0.873 0.726
Jdp2
M00125_2.00 		Mus musculus
NRTGAYDNNN
NNNHRTCAYN		 PBM
Badis et al.(2009)
Jundm2_0911 		0.872 0.726
Jdp2
M01810_2.00 		Mus musculus
NNTGACGYMW
WKRCGTCANN		 PBM
Weirauch et al.(2014)
pTH5464 		0.872 0.726
Jdp2
M02861_2.00 		Mus musculus
ATGASTCAT
ATGASTCAT		 SELEX
Jolma et al.(2013)
Jdp2_1 		0.872 0.726
Jdp2
M02862_2.00 		Mus musculus
VATGACGTCAYN
NRTGACGTCATB		 SELEX
Jolma et al.(2013)
Jdp2_2 		0.872 0.726
Jdp2
M10033_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$JDP2_03 		0.872 0.726
ATF3
M04321_2.00 		Homo sapiens
NRTGACGTCAYN
NRTGACGTCAYN		 SELEX
Yin et al.(2017)
ATF3_eDBD_HT-SELEX 		0.819 0.484
ATF3
M04323_2.00 		Homo sapiens
NRTGACGTCAYN
NRTGACGTCAYN		 SELEX
Yin et al.(2017)
ATF3_FL_HT-SELEX 		0.819 0.484
ATF3
M04032_2.00 		Homo sapiens
RTGACGTCAK
MTGACGTCAY		 SELEX
Rodriguez-Martinez et al.(2017)
ATF3.1 		0.819 0.484
ATF3
M04033_2.00 		Homo sapiens
RTGACTCAY
RTGAGTCAY		 SELEX
Rodriguez-Martinez et al.(2017)
ATF3.2 		0.819 0.484
ATF3
M07822_2.00 		Homo sapiens
VGTCACGTGRB
VYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
GM12878_ATF3_HudsonAlpha 		0.819 0.484
ATF3
M07823_2.00 		Homo sapiens
VGTCACGTGRB
VYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_ATF3_HudsonAlpha 		0.819 0.484
ATF3
M07824_2.00 		Homo sapiens
VGTCACGTGRB
VYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
HepG2_ATF3_HudsonAlpha 		0.819 0.484
ATF3
M07825_2.00 		Homo sapiens
VRTSACGTVR
YBACGTSAYB		 ChIP-seq
Gerstein et al.(2012)
K562_ATF3_Harvard 		0.819 0.484
ATF3
M08187_2.00 		Homo sapiens
GTCACGTG
CACGTGAC		 ChIP-seq
Contrino et al.(2012)
Mv41 		0.819 0.484
ATF3
M08188_2.00 		Homo sapiens
NRTGASTCAY
RTGASTCAYN		 ChIP-seq
Contrino et al.(2012)
Mv43 		0.819 0.484
ATF3
M08801_2.00 		Homo sapiens
RRTSACGTVRB
VYBACGTSAYY		 Misc
Kulakovskiy et al.(2013)
ATF3_HUMAN.H11MO.0.A 		0.819 0.484
ATF3
M09489_2.00 		Homo sapiens
NVTGASTCABNN
NNVTGASTCABN		 Misc
Heinz et al.(2010)
GBM-ATF3_GSE33912 		0.819 0.484
ATF3
M09977_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ATF3_02 		0.819 0.484
ATF3
M09978_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ATF3_05 		0.819 0.484
ATF3
M09979_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ATF3_Q6_01 		0.819 0.484
ATF3
M09980_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ATF3_Q6_02 		0.819 0.484
ATF3
M09981_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ATF3_Q6 		0.819 0.484
ATF3
M04322_2.00 		Homo sapiens
NRTGACRTCAYH
DRTGAYGTCAYN		 SELEX
Yin et al.(2017)
ATF3_eDBD_Methyl-HT-SELEX 		0.819 0.484
ATF3
M04324_2.00 		Homo sapiens
NRTGACRTCAYH
DRTGAYGTCAYN		 SELEX
Yin et al.(2017)
ATF3_FL_Methyl-HT-SELEX 		0.819 0.484
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002934744 bZIP 84 145

Links

Other bZIP family TFs
Other Xenopus tropicalis TFs

164 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACYPI001225 Acyrthosiphon pisum ACYPI001225 I 0.000
ACYPI009607 Acyrthosiphon pisum ACYPI009607 I 0.000
AAEL006419 Aedes aegypti AAEL006419 I 0.000
ENSAMEG00000018082 Ailuropoda melanoleuca ENSAMEG00000018082 I 0.000
Alligator_sinensis_CCG006987.1 Alligator sinensis Alligator_sinensis_CCG006987.1 I 0.000
ENSAPLG00000007512 Anas platyrhynchos ENSAPLG00000007512 I 0.000
RBPJ Anolis carolinensis ENSACAG00000014578 I 0.000
AALB007981 Anopheles albimanus AALB007981 I 0.000
AATE009298 Anopheles atroparvus AATE009298 I 0.000
ACOM040639 Anopheles coluzzii ACOM040639 I 0.000
ACUA014515 Anopheles culicifacies ACUA014515 I 0.000
ADAC001896 Anopheles darlingi ADAC001896 I 0.000
ADIR011431 Anopheles dirus ADIR011431 I 0.000
AEPI005106 Anopheles epiroticus AEPI005106 I 0.000
AFAF012186 Anopheles farauti AFAF012186 I 0.000
AFUN007280 Anopheles funestus AFUN007280 I 0.000
AGAP008935 Anopheles gambiae AGAP008935 I 0.000
AMAM009373 Anopheles maculatus AMAM009373 I 0.000
AMEC017285 Anopheles melas AMEC017285 I 0.000
AMEM004324 Anopheles merus AMEM004324 I 0.000
AMIN005880 Anopheles minimus AMIN005880 I 0.000
AQUA011533 Anopheles quadriannulatus AQUA011533 I 0.000
ASIS021327 Anopheles sinensis ASIS021327 I 0.000
ASTEI01929 Anopheles stephensi ASTEI01929 I 0.000
GB45655 Apis mellifera GB45655 I 0.000
Afo_R009248 Aptenodytes forsteri Afo_R009248 I 0.000
ENSAMXG00000010835 Astyanax mexicanus ENSAMXG00000010835 I 0.000
ENSAMXG00000011180 Astyanax mexicanus ENSAMXG00000011180 I 0.000
ACEP17167 Atta cephalotes ACEP17167 I 0.000
BGIBMGA003113 Bombyx mori BGIBMGA003113 I 0.000
ENSBTAP00000004696-D1 Bos grunniens ENSBTAP00000004696-D1 I 0.000
RBPJ Bos taurus ENSBTAG00000003602 I 0.000
fgenesh2_pg.scaffold_60000013 Branchiostoma floridae fgenesh2_pg.scaffold_60000013 I 0.000
fgenesh2_pg.scaffold_82000019 Branchiostoma floridae fgenesh2_pg.scaffold_82000019 I 0.000
Brh_R001357 Buceros rhinoceros Brh_R001357 I 0.000
RBPJ Callithrix jacchus ENSCJAG00000021033 I 0.000
Aan_R011115 Calypte anna Aan_R011115 I 0.000
Cflo_01916--XP_397309.1_APIME Camponotus floridanus Cflo_01916--XP_397309.1_APIME I 0.000
RBPJ Canis familiaris ENSCAFG00000016387 I 0.000
RBPJ Cavia porcellus ENSCPOG00000007041 I 0.000
Cmyd_10010997 Chelonia mydas Cmyd_10010997 I 0.000
RBPJ Choloepus hoffmanni ENSCHOG00000001582 I 0.000
CLEC005205 Cimex lectularius CLEC005205 I 0.000
CpipJ_CPIJ004183 Culex pipiens CpipJ_CPIJ004183 I 0.000
CPIJ004183 Culex quinquefasciatus CPIJ004183 I 0.000
KGM_08407 Danaus plexippus KGM_08407 I 0.000
rbpja Danio rerio ENSDARG00000003398 I 0.000
rbpjb Danio rerio ENSDARG00000052091 I 0.000
DAPPUDRAFT_98470 Daphnia pulex DAPPUDRAFT_98470 I 0.000
RBPJ Dasypus novemcinctus ENSDNOG00000035383 I 0.000
YQE_03219 Dendroctonus ponderosae YQE_03219 I 0.000
Rbpj Dipodomys ordii ENSDORG00000006352 I 0.000
GF14905 Drosophila ananassae FBgn0091930 I 0.000
GG25142 Drosophila erecta FBgn0117267 I 0.000
GH10915 Drosophila grimshawi FBgn0118396 I 0.000
Su(H) Drosophila melanogaster FBgn0004837 D 0.000
GI13259 Drosophila mojavensis FBgn0136016 I 0.000
GL26026 Drosophila persimilis FBgn0163608 I 0.000
GA25242 Drosophila pseudoobscura FBgn0246623 I 0.000
GA25243 Drosophila pseudoobscura FBgn0246624 I 0.000
GM15894 Drosophila sechellia FBgn0170810 I 0.000
Su(H) Drosophila simulans FBgn0027417 I 0.000
GJ11880 Drosophila virilis FBgn0199134 I 0.000
GE20814 Drosophila yakuba FBgn0238107 I 0.000
RBPJ Equus caballus ENSECAG00000019257 I 0.000
RBPJ Erinaceus europaeus ENSEEUG00000009686 I 0.000
ENSFALG00000009154 Ficedula albicollis ENSFALG00000009154 I 0.000
ENSGMOG00000004951 Gadus morhua ENSGMOG00000004951 I 0.000
ENSGMOG00000006156 Gadus morhua ENSGMOG00000006156 I 0.000
RBPJ Gallus gallus ENSGALG00000014365 I 0.000
Gfo_R010339 Geospiza fortis Gfo_R010339 I 0.000
RBPJ Gorilla gorilla ENSGGOG00000004582 I 0.000
HHAL001644-PA Halyomorpha halys HHAL001644-PA I 0.000
Hsal_09918--XP_397309.1_APIME Harpegnathos saltator Hsal_09918--XP_397309.1_APIME I 0.000
HMEL017244 Heliconius melpomene HMEL017244 I 0.000
RBPJ Homo sapiens ENSG00000168214 D 0.000
ENSSTOG00000004547 Ictidomys tridecemlineatus ENSSTOG00000004547 I 0.000
ISCW010197 Ixodes scapularis ISCW010197 I 0.000
ENSLACG00000007296 Latimeria chalumnae ENSLACG00000007296 I 0.000
ENSLOCG00000009731 Lepisosteus oculatus ENSLOCG00000009731 I 0.000
LDEC018359 Leptinotarsa decemlineata LDEC018359 I 0.000
RBPJ Loxodonta africana ENSLAFG00000000410 I 0.000
LCUP003485 Lucilia cuprina LCUP003485 I 0.000
LLOJ000758 Lutzomyia longipalpis LLOJ000758 I 0.000
LLOJ000759 Lutzomyia longipalpis LLOJ000759 I 0.000
ENSP00000354528 Macaca fascicularis ENSP00000354528 I 0.000
RBPJ Macaca mulatta ENSMMUG00000015828 I 0.000
MESCA005881 Megaselia scalaris MESCA005881 I 0.000
RBPJ Monodelphis domestica ENSMODG00000000129 I 0.000
MDOA002342 Musca domestica MDOA002342 I 0.000
ENSMPUG00000016715 Mustela putorius furo ENSMPUG00000016715 I 0.000
Rbpj Mus musculus ENSMUSG00000039191 D 0.000
Myotis_brandtii_RBPJ_10027377 Myotis brandtii Myotis_brandtii_RBPJ_10027377 I 0.000
RBPJ Myotis lucifugus ENSMLUG00000017187 I 0.000
NV17858 Nasonia vitripennis NV17858 I 0.000
NV17967 Nasonia vitripennis NV17967 I 0.000
ENSNLEG00000016895 Nomascus leucogenys ENSNLEG00000016895 I 0.000
Ogr02745 Ophisaurus gracilis Ogr02745 I 0.000
ENSONIG00000008873 Oreochromis niloticus ENSONIG00000008873 I 0.000
ENSONIG00000009281 Oreochromis niloticus ENSONIG00000009281 I 0.000
RBPJ Ornithorhynchus anatinus ENSOANG00000006699 I 0.000
RBPJ Oryctolagus cuniculus ENSOCUG00000013449 I 0.000
RBPJ Otolemur garnettii ENSOGAG00000007913 I 0.000
ENSOARG00000008166 Ovis aries ENSOARG00000008166 I 0.000
RBPJ Pan troglodytes ENSPTRG00000015968 I 0.000
ENSPANG00000021176 Papio anubis ENSPANG00000021176 I 0.000
PHUM462870 Pediculus humanus PHUM462870 I 0.000
ENSPSIG00000016822 Pelodiscus sinensis ENSPSIG00000016822 I 0.000
PPAI000792 Phlebotomus papatasi PPAI000792 I 0.000
ENSPFOG00000012004 Poecilia formosa ENSPFOG00000012004 I 0.000
Pvit_10584 Pogona vitticeps Pvit_10584 I 0.000
ENSPPYG00000014652 Pongo abelii ENSPPYG00000014652 I 0.000
RBPJ Pteropus vampyrus ENSPVAG00000014199 I 0.000
Rbpj Rattus norvegicus ENSRNOG00000046327 I 0.000
Sakowv30027441m.g Saccoglossus kowalevskii Sakowv30027441m.g I 0.000
ENSSHAG00000003329 Sarcophilus harrisii ENSSHAG00000003329 I 0.000
SINV15808 Solenopsis invicta SINV15808 I 0.000
RBPJ Sorex araneus ENSSARG00000001169 I 0.000
SMAR001432 Strigamia maritima SMAR001432 I 0.000
RBPJ Sus scrofa ENSSSCG00000022155 I 0.000
RBPJ Taeniopygia guttata ENSTGUG00000009245 I 0.000
RBPJ Takifugu rubripes ENSTRUG00000014798 I 0.000
ENSTSYG00000001894 Tarsius syrichta ENSTSYG00000001894 I 0.000
tetur04g02700 Tetranychus urticae tetur04g02700 I 0.000
tetur04g02730 Tetranychus urticae tetur04g02730 I 0.000
tetur11g00180 Tetranychus urticae tetur11g00180 I 0.000
tetur11g06371 Tetranychus urticae tetur11g06371 I 0.000
RBPJ Tetraodon nigroviridis ENSTNIG00000012994 I 0.000
TC014468 Tribolium castaneum TC014468 I 0.000
RBPJ Tupaia belangeri ENSTBEG00000002676 I 0.000
RBPJ Tursiops truncatus ENSTTRG00000009022 I 0.000
Tal_R001466 Tyto alba Tal_R001466 I 0.000
AAB05479 Xenopus laevis AAB05479 I 0.000
rbpj.S Xenopus laevis XB-GENE-865998 I 0.000
rbpj Xenopus tropicalis XB-GENE-490756 I 0.000
ENSXMAG00000009877 Xiphophorus maculatus ENSXMAG00000009877 I 0.000
L798_15068 Zootermopsis nevadensis L798_15068 I 0.000