VIT_17s0000g01870 (Vitis vinifera)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 VIT_17s0000g01870 T131482_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SGR5
M06805_2.00 		Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_col_a 		0.811 0.952
SGR5
M06806_2.00 		Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_colamp_a 		0.811 0.952
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_17s0000g01870.t01 C2H2 ZF 134 155
VIT_17s0000g01870.t01 C2H2 ZF 155 180

Links

Other C2H2 ZF family TFs
Other Vitis vinifera TFs

123 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.contig_35890 Carica papaya evm.TU.contig_35890 N 0.000
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.000
evm.TU.supercontig_185.4 Carica papaya evm.TU.supercontig_185.4 N 0.000
evm.TU.supercontig_185.12 Carica papaya evm.TU.supercontig_185.12 I 0.000
evm.TU.supercontig_135.3 Carica papaya evm.TU.supercontig_135.3 N 0.000
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.000
evm.TU.supercontig_1136.1 Carica papaya evm.TU.supercontig_1136.1 N 0.000
evm.TU.contig_43908 Carica papaya evm.TU.contig_43908 N 0.000
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.000
evm.TU.contig_35795 Carica papaya evm.TU.contig_35795 N 0.000
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.000
evm.TU.contig_28089 Carica papaya evm.TU.contig_28089 I 0.000
evm.TU.contig_25253.5 Carica papaya evm.TU.contig_25253.5 I 0.000
evm.TU.contig_25253.3 Carica papaya evm.TU.contig_25253.3 N 0.000
evm.TU.contig_24864.2 Carica papaya evm.TU.contig_24864.2 N 0.000
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.000
MDP0000925348 Malus domestica MDP0000925348 I 0.000
GSMUA_Achr2G18400_001 Musa acuminata GSMUA_Achr2G18400_001 N 0.000
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.000