Alligator_sinensis_CCG002534.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG002534.1 T133002_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZNF384
M04451_2.00 		Homo sapiens
TTTTBNNNNNNNNNNNNVAAAA
TTTTBNNNNNNNNNNNNVAAAA		 SELEX
Yin et al.(2017)
ZNF384_eDBD_HT-SELEX 		0.807 0.940
ZNF384
M08306_2.00 		Homo sapiens
CTTTTTTTT
AAAAAAAAG		 ChIP-seq
Schmitges et al.(2016)
Q8TF68_1-3.RCADE 		0.807 0.940
ZNF384
M08090_2.00 		Homo sapiens
WTTTTTTTNHNN
NNDNAAAAAAAW		 ChIP-seq
Mathelier et al.(2014)
MA1125.1 		0.807 0.940
ZNF384
M08888_2.00 		Homo sapiens
BVNNBTTTTTSC
GSAAAAAVNNBV		 Misc
Kulakovskiy et al.(2013)
ZN384_HUMAN.H11MO.0.C 		0.807 0.940
ZNF384
M10209_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CIZ_01 		0.807 0.940
ZNF384
M04452_2.00 		Homo sapiens
KTTTYHNNNNNNNNNNDRAAAV
BTTTYHNNNNNNNNNNDRAAAM		 SELEX
Yin et al.(2017)
ZNF384_eDBD_Methyl-HT-SELEX 		0.807 0.940
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG002534.1 C2H2 ZF 212 234
Alligator_sinensis_CCG002534.1 C2H2 ZF 240 262
Alligator_sinensis_CCG002534.1 C2H2 ZF 268 290
Alligator_sinensis_CCG002534.1 C2H2 ZF 301 323
Alligator_sinensis_CCG002534.1 C2H2 ZF 329 351
Alligator_sinensis_CCG002534.1 C2H2 ZF 357 381
Alligator_sinensis_CCG002534.1 C2H2 ZF 387 409
Alligator_sinensis_CCG002534.1 C2H2 ZF 417 439

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.supercontig_9.189 Carica papaya evm.TU.supercontig_9.189 N 0.000
Ca_00942 Cicer arietinum Ca_00942 N 0.000
Lus10009816.g Linum usitatissimum Lus10009816.g N 0.000
mgf010586m Mimulus guttatus mgf010586m N 0.000
Pavir.Ea03823 Panicum virgatum Pavir.Ea03823 N 0.000
Pavir.Eb03820 Panicum virgatum Pavir.Eb03820 N 0.000
Si000079m.g Setaria italica Si000079m.g N 0.000
Sb03g045030 Sorghum bicolor Sb03g045030 N 0.000
GRMZM2G106613 Zea mays GRMZM2G106613 N 0.000