Alligator_sinensis_CCG003489.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG003489.1 T133028_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG003489.1 C2H2 ZF 443 467
Alligator_sinensis_CCG003489.1 C2H2 ZF 473 497
Alligator_sinensis_CCG003489.1 C2H2 ZF 503 525
Alligator_sinensis_CCG003489.1 C2H2 ZF 531 553
Alligator_sinensis_CCG003489.1 C2H2 ZF 561 584

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

15 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_007_00960 Aquilegia coerulea Aquca_007_00960 N
FRS5 Arabidopsis thaliana AT4G38180 N
Bostr.25542s0007 Boechera stricta Bostr.25542s0007 N
Bo3g034290 Brassica oleracea Bo3g034290 N
PK08522.1 Cannabis sativa PK08522.1 N
Cagra.1383s0007 Capsella grandiflora Cagra.1383s0007 N
Carubv10007256m.g Capsella rubella Carubv10007256m.g N
evm.TU.supercontig_60.4 Carica papaya evm.TU.supercontig_60.4 N
Cla015971 Citrullus lanatus Cla015971 N
Ciclev10027888m.g Citrus clementina Ciclev10027888m.g N
Cucsa.099970 Cucumis sativus Cucsa.099970 N
Eucgr.I01547 Eucalyptus grandis Eucgr.I01547 N
Thhalv10024456m.g Eutrema salsugineum Thhalv10024456m.g N
gene17117-v1.0-hybrid Fragaria vesca gene17117-v1.0-hybrid N
gene12983-v1.0-hybrid Fragaria vesca gene12983-v1.0-hybrid N
GLYMA11G09400 Glycine max GLYMA11G09400 N
GLYMA01G00321 Glycine max GLYMA01G00321 N
GLYMA14G00240 Glycine max GLYMA14G00240 N
Gorai.013G065300 Gossypium raimondii Gorai.013G065300 N
MDP0000308670 Malus domestica MDP0000308670 N
MDP0000261311 Malus domestica MDP0000261311 N
MDP0000200105 Malus domestica MDP0000200105 N
cassava23399.valid.m1 Manihot esculenta cassava23399.valid.m1 N
cassava9536.m1 Manihot esculenta cassava9536.m1 N
mgf015959m Mimulus guttatus mgf015959m N
POPTR_0009s17110 Populus trichocarpa POPTR_0009s17110 N
POPTR_0011s14880 Populus trichocarpa POPTR_0011s14880 N
POPTR_0004s21880 Populus trichocarpa POPTR_0004s21880 N
Pm020704 Prunus mume Pm020704 N
Pm026968 Prunus mume Pm026968 N
PRUPE_ppa001606mg Prunus persica PRUPE_ppa001606mg N
PRUPE_ppa001597mg Prunus persica PRUPE_ppa001597mg N
SapurV1A.0047s0510 Salix purpurea SapurV1A.0047s0510 N
SapurV1A.0216s0420 Salix purpurea SapurV1A.0216s0420 N
SapurV1A.2929s0020 Salix purpurea SapurV1A.2929s0020 N
TCM_007609 Theobroma cacao TCM_007609 N
FRS5 Vitis vinifera VIT_03s0038g04140 N
VIT_04s0044g01920 Vitis vinifera VIT_04s0044g01920 N