Alligator_sinensis_CCG018328.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG018328.1 T133400_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG018328.1 C2H2 ZF 301 322
Alligator_sinensis_CCG018328.1 C2H2 ZF 328 350
Alligator_sinensis_CCG018328.1 C2H2 ZF 356 378
Alligator_sinensis_CCG018328.1 C2H2 ZF 384 406
Alligator_sinensis_CCG018328.1 C2H2 ZF 413 434
Alligator_sinensis_CCG018328.1 C2H2 ZF 440 462
Alligator_sinensis_CCG018328.1 C2H2 ZF 468 490
Alligator_sinensis_CCG018328.1 C2H2 ZF 496 518

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

37 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ATWHY2 Arabidopsis lyrata scaffold_202038.1 N 0.000
Bostr.10273s0220 Boechera stricta Bostr.10273s0220 N 0.000
Bo6g112840 Brassica oleracea Bo6g112840 N 0.000
Bra016150 Brassica rapa Bra016150 N 0.000
Cagra.0147s0016 Capsella grandiflora Cagra.0147s0016 N 0.000
Carubv10020880m.g Capsella rubella Carubv10020880m.g N 0.000
evm.TU.supercontig_249.9 Carica papaya evm.TU.supercontig_249.9 N 0.000
orange1.1g026312m.g Citrus sinensis orange1.1g026312m.g N 0.000
Eucgr.K01091 Eucalyptus grandis Eucgr.K01091 N 0.000
Thhalv10019058m.g Eutrema salsugineum Thhalv10019058m.g N 0.000
GLYMA19G43880 Glycine max GLYMA19G43880 N 0.000
GLYMA03G41270 Glycine max GLYMA03G41270 N 0.000
Gorai.004G266000 Gossypium raimondii Gorai.004G266000 N 0.000
MLOC_19666 Hordeum vulgare MLOC_19666 N 0.000
Lus10035067.g Linum usitatissimum Lus10035067.g N 0.000
Lus10017892.g Linum usitatissimum Lus10017892.g N 0.000
chr1.LjT14G19.90.nc Lotus japonicus chr1.LjT14G19.90.nc N 0.000
MDP0000168614 Malus domestica MDP0000168614 N 0.000
cassava24783.valid.m1 Manihot esculenta cassava24783.valid.m1 N 0.000
MTR_7g116270 Medicago truncatula MTR_7g116270 N 0.000
mgf015710m Mimulus guttatus mgf015710m N 0.000
ATWHY2 Populus trichocarpa POPTR_0003s04700 N 0.000
Pm022821 Prunus mume Pm022821 N 0.000
PRUPE_ppa011529mg Prunus persica PRUPE_ppa011529mg N 0.000
SapurV1A.0002s0060 Salix purpurea SapurV1A.0002s0060 N 0.000
Solyc11g044750.1 Solanum lycopersicum Solyc11g044750.1 N 0.000
PGSC0003DMG400022930 Solanum tuberosum PGSC0003DMG400022930 N 0.000