Brh_R011012 (Buceros rhinoceros)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Brh_R011012 T133647_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZBTB18
M02916_2.00 		Homo sapiens
VMACATCTGGAWN
NWTCCAGATGTKB		 SELEX
Jolma et al.(2013)
ZNF238_1 		0.759 0.921
ZBTB18
M02917_2.00 		Homo sapiens
NMACATCTGGMHN
NDKCCAGATGTKN		 SELEX
Jolma et al.(2013)
ZNF238_2 		0.759 0.921
ZBTB18
M04585_2.00 		Homo sapiens
NMACATCTGGMHN
NDKCCAGATGTKN		 SELEX
Yin et al.(2017)
ZBTB18_eDBD_HT-SELEX 		0.759 0.921
ZBTB18
M08350_2.00 		Homo sapiens
MRCAKCTGG
CCAGMTGYK		 ChIP-seq
Schmitges et al.(2016)
Q99592_2-4.RCADE 		0.759 0.921
ZBTB18
M08928_2.00 		Homo sapiens
VMRCAKCTGGV
BCCAGMTGYKB		 Misc
Kulakovskiy et al.(2013)
ZBT18_HUMAN.H11MO.0.C 		0.759 0.921
ZBTB18
M10282_2.00 		Homo sapiens
NNMACATCTGGM
KCCAGATGTKNN		 Transfac
Matys et al.(2006)
V$RP58_01 		0.759 0.921
ZBTB18
M10283_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RP58_Q3 		0.759 0.921
ZBTB18
M04586_2.00 		Homo sapiens
NMACATCTGBHNN
NNDVCAGATGTKN		 SELEX
Yin et al.(2017)
ZBTB18_eDBD_Methyl-HT-SELEX 		0.759 0.921
ZBTB18
M08257_2.00 		Homo sapiens
NMGCAGCTGCKB
VMGCAGCTGCKN		 ChIP-seq
Najafabadi et al.(2015b)
ZNF238 		0.759 0.901
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Brh_R011012 C2H2 ZF 347 369
Brh_R011012 C2H2 ZF 388 409
Brh_R011012 C2H2 ZF 415 437
Brh_R011012 C2H2 ZF 445 466

Links

Other C2H2 ZF family TFs
Other Buceros rhinoceros TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_25468 Aegilops tauschii F775_25468 I
AMTR_s00016p00083040 Amborella trichopoda AMTR_s00016p00083040 I
Aquca_043_00044 Aquilegia coerulea Aquca_043_00044 I
LFY Arabidopsis lyrata Al_scaffold_0008_2690 I
LFY Arabidopsis thaliana AT5G61850 D
Bostr.26833s0050 Boechera stricta Bostr.26833s0050 I
BRADI5G20340 Brachypodium distachyon BRADI5G20340 I
Bo2g161690 Brassica oleracea Bo2g161690 I
Bo3g109270 Brassica oleracea Bo3g109270 I
Bra019619 Brassica rapa Bra019619 I
Bra029305 Brassica rapa Bra029305 I
PK10917.1 Cannabis sativa PK10917.1 I
Cagra.4553s0022 Capsella grandiflora Cagra.4553s0022 I
Carubv10028602m.g Capsella rubella Carubv10028602m.g I
evm.TU.supercontig_13.181 Carica papaya evm.TU.supercontig_13.181 I
Ca_01386 Cicer arietinum Ca_01386 I
Cla019619 Citrullus lanatus Cla019619 I
Ciclev10033942m.g Citrus clementina Ciclev10033942m.g I
orange1.1g044766m.g Citrus sinensis orange1.1g044766m.g I
Cucsa.156880 Cucumis sativus Cucsa.156880 I
Eucgr.K02192 Eucalyptus grandis Eucgr.K02192 I
Thhalv10005606m.g Eutrema salsugineum Thhalv10005606m.g I
gene33406-v1.0-hybrid Fragaria vesca gene33406-v1.0-hybrid I
gene30750-v1.0-hybrid Fragaria vesca gene30750-v1.0-hybrid I
gene30747-v1.0-hybrid Fragaria vesca gene30747-v1.0-hybrid I
gene30683-v1.0-hybrid Fragaria vesca gene30683-v1.0-hybrid I
GLYMA06G17170 Glycine max GLYMA06G17170 I
GLYMA04G37900 Glycine max GLYMA04G37900 I
Gorai.001G053900 Gossypium raimondii Gorai.001G053900 I
MLOC_14305 Hordeum vulgare MLOC_14305 I
LPERR04G19570 Leersia perrieri LPERR04G19570 I
Lus10022427.g Linum usitatissimum Lus10022427.g I
chr1.CM0094.750.nd Lotus japonicus chr1.CM0094.750.nd I
cassava40548.m1 Manihot esculenta cassava40548.m1 I
cassava19992.m1 Manihot esculenta cassava19992.m1 I
MTR_3g098560 Medicago truncatula MTR_3g098560 I
mgf020579m Mimulus guttatus mgf020579m I
mgf013601m Mimulus guttatus mgf013601m I
GSMUA_Achr6G16390_001 Musa acuminata GSMUA_Achr6G16390_001 I
OBART04G23870 Oryza barthii OBART04G23870 I
OB04G30790 Oryza brachyantha OB04G30790 I
ORGLA04G0204600 Oryza glaberrima ORGLA04G0204600 I
OGLUM04G23830 Oryza glumaepatula OGLUM04G23830 I
OSL Oryza indica BGIOSGA014428 I
OLONG_021167 Oryza longistaminata OLONG_021167 I
OMERI04G19760 Oryza meridionalis OMERI04G19760 I
ONIVA04G23030 Oryza nivara ONIVA04G23030 I
OPUNC04G21410 Oryza punctata OPUNC04G21410 I
ORUFI04G25610 Oryza rufipogon ORUFI04G25610 I
FL Oryza sativa OS04G0598300 I
Pavir.Ga00621 Panicum virgatum Pavir.Ga00621 I
Pavir.Gb00795 Panicum virgatum Pavir.Gb00795 I
estExt_fgenesh1_pg.C_740147 Physcomitrella patens estExt_fgenesh1_pg.C_740147 I
estExt_fgenesh1_pg.C_520047 Physcomitrella patens estExt_fgenesh1_pg.C_520047 N
FL Populus trichocarpa POPTR_0015s11820 I
Pm024610 Prunus mume Pm024610 I
PRUPE_ppa006372mg Prunus persica PRUPE_ppa006372mg I
30147.m014401 Ricinus communis 30147.m014401 I
SapurV1A.2394s0010 Salix purpurea SapurV1A.2394s0010 I
SELMODRAFT_85923 Selaginella moellendorffii SELMODRAFT_85923 I
Si011756m.g Setaria italica Si011756m.g I
Solyc03g118160.1 Solanum lycopersicum Solyc03g118160.1 I
PGSC0003DMG400014174 Solanum tuberosum PGSC0003DMG400014174 I
Sb06g027340 Sorghum bicolor Sb06g027340 I
TCM_014768 Theobroma cacao TCM_014768 I
Traes_2BL_8DEC0EFBF Triticum aestivum Traes_2BL_8DEC0EFBF I
Traes_2AL_83D0D0C3F Triticum aestivum Traes_2AL_83D0D0C3F I
LFY Vitis vinifera VIT_17s0000g00150 I
GRMZM2G180190 Zea mays GRMZM2G180190 I
GRMZM2G098813 Zea mays GRMZM2G098813 I