Gfo_R000665 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R000665 T135650_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HIVEP2
M10101_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MIBP1_Q6 		0.780 0.880
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R000665 C2H2 ZF 376 398
Gfo_R000665 C2H2 ZF 404 426
Gfo_R000665 C2H2 ZF 2028 2050
Gfo_R000665 C2H2 ZF 2056 2080

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

199 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000010582 Ailuropoda melanoleuca ENSAMEG00000010582 I 0.000
Alligator_sinensis_CCG010967.1 Alligator sinensis Alligator_sinensis_CCG010967.1 I 0.000
ENSACAG00000017764 Anolis carolinensis ENSACAG00000017764 I 0.000
LIN28B Anolis carolinensis ENSACAG00000003957 I 0.000
Afo_R008930 Aptenodytes forsteri Afo_R008930 I 0.000
ENSAMXG00000001573 Astyanax mexicanus ENSAMXG00000001573 I 0.000
yakA12818 Bos grunniens yakA12818 I 0.000
ENSBTAP00000053651-D1 Bos grunniens ENSBTAP00000053651-D1 I 0.000
ENSBTAP00000004196-D2 Bos grunniens ENSBTAP00000004196-D2 I 0.000
ENSBTAG00000040497 Bos taurus ENSBTAG00000040497 I 0.000
LIN28B Bos taurus ENSBTAG00000043973 I 0.000
Brh_R006709 Buceros rhinoceros Brh_R006709 I 0.000
LIN28A Callithrix jacchus ENSCJAG00000009796 I 0.000
Aan_R005866 Calypte anna Aan_R005866 I 0.000
Aan_R002277 Calypte anna Aan_R002277 I 0.000
LIN28A Canis familiaris ENSCAFG00000012488 I 0.000
Cmyd_10021069 Chelonia mydas Cmyd_10021069 I 0.000
Cmyd_10009744 Chelonia mydas Cmyd_10009744 I 0.000
ENSCSAG00000000975 Chlorocebus sabaeus ENSCSAG00000000975 I 0.000
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I 0.000
LIN28A Equus caballus ENSECAG00000020267 I 0.000
LIN28B Equus caballus ENSECAG00000020994 I 0.000
LIN28B Erinaceus europaeus ENSEEUG00000003632 I 0.000
LIN28A Felis catus ENSFCAG00000012810 I 0.000
ENSFALG00000000374 Ficedula albicollis ENSFALG00000000374 I 0.000
ENSGALG00000000388 Gallus gallus ENSGALG00000000388 I 0.000
LIN28B Gallus gallus ENSGALG00000026761 I 0.000
si:ch1073-284b18.2 Gasterosteus aculeatus ENSGACG00000013893 I 0.000
Gfo_R011576 Geospiza fortis Gfo_R011576 I 0.000
LIN28A Gorilla gorilla ENSGGOG00000024918 I 0.000
LIN28A Homo sapiens ENSG00000131914 I 0.000
ENSSTOG00000004329 Ictidomys tridecemlineatus ENSSTOG00000004329 I 0.000
ENSSTOG00000002692 Ictidomys tridecemlineatus ENSSTOG00000002692 I 0.000
ENSLACG00000004053 Latimeria chalumnae ENSLACG00000004053 I 0.000
ENSLOCG00000003353 Lepisosteus oculatus ENSLOCG00000003353 I 0.000
LIN28A Loxodonta africana ENSLAFG00000017525 I 0.000
ENSP00000254231 Macaca fascicularis ENSP00000254231 I 0.000
ENSMMUG00000032211 Macaca mulatta ENSMMUG00000032211 I 0.000
ENSMEUG00000008743 Macropus eugenii ENSMEUG00000008743 I 0.000
LIN28A Meleagris gallopavo ENSMGAG00000009456 I 0.000
LIN28B Meleagris gallopavo ENSMGAG00000013531 I 0.000
ENSMPUG00000015724 Mustela putorius furo ENSMPUG00000015724 I 0.000
Lin28a Mus musculus ENSMUSG00000050966 I 0.000
Myotis_brandtii_Lin28a_10029661 Myotis brandtii Myotis_brandtii_Lin28a_10029661 I 0.000
LIN28B Myotis lucifugus ENSMLUG00000006883 I 0.000
ENSMLUG00000010158 Myotis lucifugus ENSMLUG00000010158 I 0.000
ENSNLEG00000009294 Nomascus leucogenys ENSNLEG00000009294 I 0.000
LIN28A Ochotona princeps ENSOPRG00000001591 I 0.000
Ogr09706 Ophisaurus gracilis Ogr09706 I 0.000
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I 0.000
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I 0.000
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I 0.000
LIN28A Otolemur garnettii ENSOGAG00000003971 I 0.000
ENSOARG00000004614 Ovis aries ENSOARG00000004614 I 0.000
ENSOARG00000011404 Ovis aries ENSOARG00000011404 I 0.000
LIN28A Pan troglodytes ENSPTRG00000000384 I 0.000
ENSPANG00000009841 Papio anubis ENSPANG00000009841 I 0.000
ENSPSIG00000018001 Pelodiscus sinensis ENSPSIG00000018001 I 0.000
ENSPFOG00000019352 Poecilia formosa ENSPFOG00000019352 I 0.000
Pvit_17184 Pogona vitticeps Pvit_17184 I 0.000
ENSPPYG00000001684 Pongo abelii ENSPPYG00000001684 I 0.000
LIN28A Pteropus vampyrus ENSPVAG00000017267 I 0.000
Lin28a Rattus norvegicus ENSRNOG00000060320 I 0.000
ENSSHAG00000012716 Sarcophilus harrisii ENSSHAG00000012716 I 0.000
LIN28A Sus scrofa ENSSSCG00000003557 I 0.000
ENSSSCG00000004365 Sus scrofa ENSSSCG00000004365 I 0.000
ENSTGUG00000001037 Taeniopygia guttata ENSTGUG00000001037 I 0.000
lin28a Takifugu rubripes ENSTRUG00000009454 I 0.000
ENSTSYG00000011513 Tarsius syrichta ENSTSYG00000011513 I 0.000
ENSTSYG00000006480 Tarsius syrichta ENSTSYG00000006480 I 0.000
LIN28A Tursiops truncatus ENSTTRG00000005678 I 0.000
Tal_R007754 Tyto alba Tal_R007754 I 0.000
ENSVPAG00000008073 Vicugna pacos ENSVPAG00000008073 I 0.000