Gfo_R012197 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R012197 T135840_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R012197 C2H2 ZF 562 584
Gfo_R012197 C2H2 ZF 590 612
Gfo_R012197 C2H2 ZF 618 635
Gfo_R012197 C2H2 ZF 646 668

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG010969.1 Alligator sinensis Alligator_sinensis_CCG010969.1 N 0.767
ENSAPLG00000013593 Anas platyrhynchos ENSAPLG00000013593 N 0.817
PRDM1 Anolis carolinensis ENSACAG00000005496 N 0.815
Afo_R003683 Aptenodytes forsteri Afo_R003683 N 0.817
ENSBTAP00000001081-D1 Bos grunniens ENSBTAP00000001081-D1 N 0.814
PRDM1 Bos taurus ENSBTAG00000000816 N 0.814
estExt_fgenesh2_pg.C_440063 Branchiostoma floridae estExt_fgenesh2_pg.C_440063 N 0.800
estExt_fgenesh2_pg.C_440053 Branchiostoma floridae estExt_fgenesh2_pg.C_440053 N 0.800
prdm1a Danio rerio ENSDARG00000002445 N 0.814
GL12308 Drosophila persimilis FBgn0149915 N 0.774
EEL_0000388201 Elaeophora elaphi EEL_0000388201 N 0.758
ENSFALG00000011624 Ficedula albicollis ENSFALG00000011624 N 0.817
ENSGMOG00000010670 Gadus morhua ENSGMOG00000010670 N 0.773
ENSGMOG00000009730 Gadus morhua ENSGMOG00000009730 N 0.817
ENSGALG00000015388 Gallus gallus ENSGALG00000015388 N 0.817
ENSGACG00000009358 Gasterosteus aculeatus ENSGACG00000009358 N 0.815
prdm1a Gasterosteus aculeatus ENSGACG00000001740 N 0.805
ENSLOCG00000016531 Lepisosteus oculatus ENSLOCG00000016531 N 0.817
PRDM1 Meleagris gallopavo ENSMGAG00000013524 N 0.817
Ogr18550 Ophisaurus gracilis Ogr18550 N 0.815
ENSONIG00000006687 Oreochromis niloticus ENSONIG00000006687 N 0.805
prdm1a Oryzias latipes ENSORLG00000015684 N 0.805
ENSOARG00000011272 Ovis aries ENSOARG00000011272 N 0.814
ENSOARG00000004628 Ovis aries ENSOARG00000004628 N 0.759
Pvit_09291 Pogona vitticeps Pvit_09291 N 0.815
PRDM1 Taeniopygia guttata ENSTGUG00000012204 N 0.817
prdm1 Takifugu rubripes ENSTRUG00000000404 N 0.805
ENSTRUG00000007847 Takifugu rubripes ENSTRUG00000007847 N 0.788
prdm1.S Xenopus laevis XB-GENE-853257 N 0.814
XP_002937203 Xenopus tropicalis XP_002937203 N 0.817