28152.m000908 (Ricinus communis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 28152.m000908 T137762_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.812 0.913
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.799 0.717
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.799 0.696
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.788 0.848
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.782 0.783
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.782 0.783
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.782 0.783
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.782 0.783
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.782 0.783
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.776 0.696
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.760 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
28152.m000908 C2H2 ZF 88 110
28152.m000908 C2H2 ZF 142 164

Links

Other C2H2 ZF family TFs
Other Ricinus communis TFs

294 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.788
AZF3 Arabidopsis lyrata scaffold_800768.1 I 0.782
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.782
ZAT10 Arabidopsis thaliana AT1G27730 D 0.782
ZAT6 Arabidopsis thaliana AT5G04340 D 0.788
AZF3 Arabidopsis thaliana AT5G43170 I 0.782
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.787
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.788
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.788
BRADI4G03410 Brachypodium distachyon BRADI4G03410 I 0.780
BRADI4G03340 Brachypodium distachyon BRADI4G03340 I 0.763
BRADI1G16010 Brachypodium distachyon BRADI1G16010 I
Bo3g142840 Brassica oleracea Bo3g142840 I 0.782
Bo9g181170 Brassica oleracea Bo9g181170 I 0.788
Bo5g052290 Brassica oleracea Bo5g052290 I 0.763
Bo7g065200 Brassica oleracea Bo7g065200 I 0.788
Bo7g048650 Brassica oleracea Bo7g048650 I 0.787
Bra032845 Brassica rapa Bra032845 I 0.763
Bra010922 Brassica rapa Bra010922 I 0.782
Bra009464 Brassica rapa Bra009464 I 0.788
Bra033666 Brassica rapa Bra033666 I 0.788
Cagra.7309s0002 Capsella grandiflora Cagra.7309s0002 I
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I 0.794
Carubv10018774m.g Capsella rubella Carubv10018774m.g I
Carubv10001868m.g Capsella rubella Carubv10001868m.g I 0.794
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.788
Ca_05641 Cicer arietinum Ca_05641 I 0.794
Cla022966 Citrullus lanatus Cla022966 I 0.771
Cucsa.395710 Cucumis sativus Cucsa.395710 I 0.771
Eucgr.K00165 Eucalyptus grandis Eucgr.K00165 I 0.760
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I 0.768
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.788
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.788
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.794
Gorai.008G106500 Gossypium raimondii Gorai.008G106500 I 0.768
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.792
LPERR03G21480 Leersia perrieri LPERR03G21480 I 0.773
Lus10038929.g Linum usitatissimum Lus10038929.g N
cassava19892.m1 Manihot esculenta cassava19892.m1 I 0.769
cassava14164.m1 Manihot esculenta cassava14164.m1 I 0.769
mgf021094m Mimulus guttatus mgf021094m I 0.768
mgf017082m Mimulus guttatus mgf017082m I 0.769
OBART03G22570 Oryza barthii OBART03G22570 I
OB03G31780 Oryza brachyantha OB03G31780 I
ORGLA03G0210300 Oryza glaberrima ORGLA03G0210300 I
OGLUM03G23350 Oryza glumaepatula OGLUM03G23350 I
BGIOSGA010468 Oryza indica BGIOSGA010468 I
OLONG_027628 Oryza longistaminata OLONG_027628 I
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.777
ORUFI03G23240 Oryza rufipogon ORUFI03G23240 I
OS03G0437200 Oryza sativa OS03G0437200 I
OS12G0583700 Oryza sativa OS12G0583700 I 0.777
Pavir.Ba01050 Panicum virgatum Pavir.Ba01050 I
Pavir.J15191 Panicum virgatum Pavir.J15191 I
30174.m008818 Ricinus communis 30174.m008818 I 0.769
Solyc01g107170.2 Solanum lycopersicum Solyc01g107170.2 I 0.768
Solyc01g090840.2 Solanum lycopersicum Solyc01g090840.2 I
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I 0.786
PGSC0003DMG400026020 Solanum tuberosum PGSC0003DMG400026020 I
Sb02g038070 Sorghum bicolor Sb02g038070 I
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.782
AC185108.3_FG011 Zea mays AC185108.3_FG011 I