Pavir.Hb00003 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.Hb00003 T143370_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.772 0.717
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.763 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Hb00003.1.p C2H2 ZF 50 72
Pavir.Hb00003.1.p C2H2 ZF 101 123

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

150 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_08752 Aegilops tauschii F775_08752 I 0.778
F775_14723 Aegilops tauschii F775_14723 I 0.791
F775_17661 Aegilops tauschii F775_17661 I 0.759
F775_18608 Aegilops tauschii F775_18608 I 0.759
F775_18609 Aegilops tauschii F775_18609 I 0.766
F775_18611 Aegilops tauschii F775_18611 I 0.762
F775_22659 Aegilops tauschii F775_22659 I 0.759
F775_30269 Aegilops tauschii F775_30269 I 0.762
F775_30895 Aegilops tauschii F775_30895 I 0.760
F775_30896 Aegilops tauschii F775_30896 I 0.784
F775_52290 Aegilops tauschii F775_52290 I 0.762
fgenesh2_kg.5__981__AT3G46090.1 Arabidopsis lyrata fgenesh2_kg.5__981__AT3G46090.1 I 0.772
scaffold_501490.1 Arabidopsis lyrata scaffold_501490.1 I 0.763
AT3G46070 Arabidopsis thaliana AT3G46070 D 0.763
ZAT8 Arabidopsis thaliana AT3G46080 I 0.772
ZAT7 Arabidopsis thaliana AT3G46090 D 0.772
Bostr.18473s0333 Boechera stricta Bostr.18473s0333 I 0.772
BRADI1G03770 Brachypodium distachyon BRADI1G03770 I 0.760
BRADI1G03780 Brachypodium distachyon BRADI1G03780 I 0.759
BRADI1G03790 Brachypodium distachyon BRADI1G03790 I 0.759
BRADI2G54500 Brachypodium distachyon BRADI2G54500 I 0.758
BRADI4G09410 Brachypodium distachyon BRADI4G09410 I 0.785
Bo1g067420 Brassica oleracea Bo1g067420 I 0.762
Bra019477 Brassica rapa Bra019477 I 0.762
Cagra.7309s0001 Capsella grandiflora Cagra.7309s0001 I 0.772
Cagra.7309s0002 Capsella grandiflora Cagra.7309s0002 I 0.762
Carubv10018142m.g Capsella rubella Carubv10018142m.g I 0.772
Carubv10018774m.g Capsella rubella Carubv10018774m.g I 0.762
Eucgr.B02398 Eucalyptus grandis Eucgr.B02398 I 0.759
Thhalv10002839m.g Eutrema salsugineum Thhalv10002839m.g I 0.762
MLOC_14920 Hordeum vulgare MLOC_14920 I 0.783
MLOC_19822 Hordeum vulgare MLOC_19822 I 0.760
MLOC_63032 Hordeum vulgare MLOC_63032 I 0.759
MLOC_67028 Hordeum vulgare MLOC_67028 I 0.759
MLOC_76196 Hordeum vulgare MLOC_76196 I 0.791
LPERR01G31500 Leersia perrieri LPERR01G31500 I 0.758
LPERR03G33230 Leersia perrieri LPERR03G33230 I 0.760
LPERR03G33240 Leersia perrieri LPERR03G33240 I 0.759
LPERR05G15220 Leersia perrieri LPERR05G15220 I 0.756
Lus10040312.g Linum usitatissimum Lus10040312.g I 0.773
GSMUA_Achr10G06730_001 Musa acuminata GSMUA_Achr10G06730_001 I 0.758
GSMUA_Achr10G13530_001 Musa acuminata GSMUA_Achr10G13530_001 I 0.760
GSMUA_Achr11G02250_001 Musa acuminata GSMUA_Achr11G02250_001 I 0.758
GSMUA_Achr11G21920_001 Musa acuminata GSMUA_Achr11G21920_001 I 0.758
GSMUA_Achr11G23970_001 Musa acuminata GSMUA_Achr11G23970_001 I 0.784
GSMUA_Achr1G06720_001 Musa acuminata GSMUA_Achr1G06720_001 I 0.758
OBART03G39050 Oryza barthii OBART03G39050 I 0.759
OBART05G19310 Oryza barthii OBART05G19310 I 0.772
OBART11G23480 Oryza barthii OBART11G23480 I 0.791
OB03G46010 Oryza brachyantha OB03G46010 I 0.759
OB11G27860 Oryza brachyantha OB11G27860 I 0.791
ORGLA01G0304700 Oryza glaberrima ORGLA01G0304700 I 0.758
ORGLA03G0358100 Oryza glaberrima ORGLA03G0358100 I 0.760
ORGLA03G0358200 Oryza glaberrima ORGLA03G0358200 I 0.759
ORGLA05G0167500 Oryza glaberrima ORGLA05G0167500 I 0.772
ORGLA11G0188100 Oryza glaberrima ORGLA11G0188100 I 0.791
OGLUM01G40530 Oryza glumaepatula OGLUM01G40530 I 0.758
OGLUM03G38900 Oryza glumaepatula OGLUM03G38900 I 0.760
OGLUM03G38910 Oryza glumaepatula OGLUM03G38910 I 0.759
OGLUM05G20400 Oryza glumaepatula OGLUM05G20400 I 0.772
BGIOSGA004768 Oryza indica BGIOSGA004768 I 0.758
BGIOSGA013831 Oryza indica BGIOSGA013831 I 0.760
BGIOSGA013832 Oryza indica BGIOSGA013832 I 0.759
BGIOSGA033524 Oryza indica BGIOSGA033524 I 0.791
OMERI01G33710 Oryza meridionalis OMERI01G33710 I 0.758
OMERI03G35870 Oryza meridionalis OMERI03G35870 I 0.760
OMERI03G35880 Oryza meridionalis OMERI03G35880 I 0.759
OMERI05G16850 Oryza meridionalis OMERI05G16850 I 0.772
ONIVA01G41740 Oryza nivara ONIVA01G41740 I 0.758
ONIVA03G40710 Oryza nivara ONIVA03G40710 I 0.760
ONIVA03G40720 Oryza nivara ONIVA03G40720 I 0.759
ONIVA05G20190 Oryza nivara ONIVA05G20190 I 0.772
OPUNC01G35440 Oryza punctata OPUNC01G35440 I 0.758
OPUNC01G35470 Oryza punctata OPUNC01G35470 I 0.758
OPUNC11G19830 Oryza punctata OPUNC11G19830 I 0.791
ORUFI03G40740 Oryza rufipogon ORUFI03G40740 I 0.760
ORUFI05G20520 Oryza rufipogon ORUFI05G20520 I 0.772
ORUFI11G25330 Oryza rufipogon ORUFI11G25330 I 0.791
OS01G0839100 Oryza sativa OS01G0839100 I 0.758
OS03G0820300 Oryza sativa OS03G0820300 I 0.760
OS03G0820400 Oryza sativa OS03G0820400 I 0.759
OS05G0460900 Oryza sativa OS05G0460900 I 0.772
OS11G0702400 Oryza sativa OS11G0702400 I 0.791
Pavir.Cb00699 Panicum virgatum Pavir.Cb00699 N 0.777
Pavir.Da00814 Panicum virgatum Pavir.Da00814 I 0.820
Pavir.Da00815 Panicum virgatum Pavir.Da00815 I 0.820
Pavir.Da01393 Panicum virgatum Pavir.Da01393 I 0.773
Pavir.Da01563 Panicum virgatum Pavir.Da01563 I 0.821
Pavir.Eb03660 Panicum virgatum Pavir.Eb03660 I 0.758
Pavir.Ha00193 Panicum virgatum Pavir.Ha00193 I 0.767
Pavir.Ha00194 Panicum virgatum Pavir.Ha00194 I 0.827
Pavir.Hb00023 Panicum virgatum Pavir.Hb00023 I 0.773
Pavir.Hb00056 Panicum virgatum Pavir.Hb00056 I 0.827
Pavir.Ia00291 Panicum virgatum Pavir.Ia00291 I 0.759
Pavir.Ia00292 Panicum virgatum Pavir.Ia00292 I 0.759
Pavir.J00893 Panicum virgatum Pavir.J00893 I 0.759
Pavir.J00894 Panicum virgatum Pavir.J00894 I 0.759
Pavir.J03079 Panicum virgatum Pavir.J03079 I 0.799
Pavir.J04850 Panicum virgatum Pavir.J04850 I 0.764
Pavir.J14296 Panicum virgatum Pavir.J14296 I 0.815
Pavir.J14338 Panicum virgatum Pavir.J14338 I 0.758
Pavir.J30713 Panicum virgatum Pavir.J30713 I 0.815
SapurV1A.0008s0970 Salix purpurea SapurV1A.0008s0970 I 0.772
Si003051m.g Setaria italica Si003051m.g I 0.759
Si008395m.g Setaria italica Si008395m.g I 0.764
Si026973m.g Setaria italica Si026973m.g I 0.821
Si027432m.g Setaria italica Si027432m.g I 0.821
Si037251m.g Setaria italica Si037251m.g I 0.759
Si037672m.g Setaria italica Si037672m.g I 0.759
Solyc06g075780.1 Solanum lycopersicum Solyc06g075780.1 I 0.760
Solyc11g073060.1 Solanum lycopersicum Solyc11g073060.1 I 0.759
PGSC0003DMG401030312 Solanum tuberosum PGSC0003DMG401030312 I 0.760
Sb01g003280 Sorghum bicolor Sb01g003280 I 0.759
Sb03g039270 Sorghum bicolor Sb03g039270 I 0.758
Sb05g027450 Sorghum bicolor Sb05g027450 I 0.810
Sb10g031270 Sorghum bicolor Sb10g031270 I 0.758
TRAES3BF127400030CFD_g Triticum aestivum TRAES3BF127400030CFD_g I 0.758
Traes_4DS_276818E4F Triticum aestivum Traes_4DS_276818E4F I 0.791
Traes_5BL_3A9D3CEEF Triticum aestivum Traes_5BL_3A9D3CEEF I 0.760
Traes_5BL_3B50B6963 Triticum aestivum Traes_5BL_3B50B6963 I 0.760
Traes_5BL_56E52A2FC Triticum aestivum Traes_5BL_56E52A2FC N 0.760
Traes_5BL_630A8A142 Triticum aestivum Traes_5BL_630A8A142 I 0.762
Traes_5BL_63AE36D3A Triticum aestivum Traes_5BL_63AE36D3A I 0.762
Traes_5BL_6F2D345E2 Triticum aestivum Traes_5BL_6F2D345E2 I 0.760
Traes_5BL_8DB8274DB1 Triticum aestivum Traes_5BL_8DB8274DB1 I 0.759
Traes_5BL_9C687EE11 Triticum aestivum Traes_5BL_9C687EE11 I 0.760
Traes_5BL_B038BE0A3 Triticum aestivum Traes_5BL_B038BE0A3 I 0.759
Traes_5BL_BB99746DD Triticum aestivum Traes_5BL_BB99746DD I 0.760
Traes_5BL_D53A846BE Triticum aestivum Traes_5BL_D53A846BE I 0.762
Traes_5BL_F74D668D9 Triticum aestivum Traes_5BL_F74D668D9 I 0.762
Traes_5DL_4B4927090 Triticum aestivum Traes_5DL_4B4927090 I 0.783
Traes_5DL_4E890ABF3 Triticum aestivum Traes_5DL_4E890ABF3 I 0.762
Traes_5DL_50E35B4F3 Triticum aestivum Traes_5DL_50E35B4F3 I 0.759
Traes_5DL_90F570468 Triticum aestivum Traes_5DL_90F570468 I 0.760
Traes_5DL_9D713AD9C Triticum aestivum Traes_5DL_9D713AD9C I 0.760
Traes_5DL_F269EF70D Triticum aestivum Traes_5DL_F269EF70D I 0.759
TRIUR3_01057 Triticum urartu TRIUR3_01057 N 0.764
TRIUR3_01060 Triticum urartu TRIUR3_01060 I 0.784
TRIUR3_01063 Triticum urartu TRIUR3_01063 I 0.761
TRIUR3_01065 Triticum urartu TRIUR3_01065 I 0.760
TRIUR3_12166 Triticum urartu TRIUR3_12166 I 0.759
TRIUR3_15911 Triticum urartu TRIUR3_15911 I 0.759
TRIUR3_15912 Triticum urartu TRIUR3_15912 I 0.762
GRMZM2G002805 Zea mays GRMZM2G002805 I 0.764
GRMZM2G002815 Zea mays GRMZM2G002815 I 0.759
GRMZM2G061626 Zea mays GRMZM2G061626 I 0.769
GRMZM2G112799 Zea mays GRMZM2G112799 I 0.758
GRMZM2G307402 Zea mays GRMZM2G307402 I 0.759
GRMZM2G338056 Zea mays GRMZM2G338056 I 0.815
GRMZM2G376061 Zea mays GRMZM2G376061 I 0.758