ALUE_0002049001 (Ascaris lumbricoides)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 ALUE_0002049001 T151972_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.770 0.781
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.770 0.781
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.770 0.781
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.770 0.781
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.763 0.763
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.763 0.763
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.763 0.763
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.763 0.763
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.760 0.754
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.760 0.754
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.760 0.754
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ALUE_0002049001-mRNA-1 C2H2 ZF 40 62
ALUE_0002049001-mRNA-1 C2H2 ZF 71 93
ALUE_0002049001-mRNA-1 C2H2 ZF 97 119
ALUE_0002049001-mRNA-1 C2H2 ZF 125 147
ALUE_0002049001-mRNA-1 C2H2 ZF 155 176

Links

Other C2H2 ZF family TFs
Other Ascaris lumbricoides TFs

186 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
FRS12 Arabidopsis thaliana AT5G18960 N
FRS7 Arabidopsis thaliana AT3G06250 N
Bostr.26527s0315 Boechera stricta Bostr.26527s0315 N
Bostr.2570s0035 Boechera stricta Bostr.2570s0035 N
PK22885.1 Cannabis sativa PK22885.1 N
Cagra.0263s0023 Capsella grandiflora Cagra.0263s0023 N
Cagra.3793s0006 Capsella grandiflora Cagra.3793s0006 N
Carubv10013017m.g Capsella rubella Carubv10013017m.g N
Carubv10000255m.g Capsella rubella Carubv10000255m.g N
evm.TU.supercontig_16.55 Carica papaya evm.TU.supercontig_16.55 N
Ciclev10004376m.g Citrus clementina Ciclev10004376m.g N
orange1.1g004138m.g Citrus sinensis orange1.1g004138m.g N
Cucsa.253860 Cucumis sativus Cucsa.253860 N
Thhalv10020128m.g Eutrema salsugineum Thhalv10020128m.g N
Thhalv10012731m.g Eutrema salsugineum Thhalv10012731m.g N
gene06133-v1.0-hybrid Fragaria vesca gene06133-v1.0-hybrid N
GLYMA13G28230 Glycine max GLYMA13G28230 N
GLYMA15G10830 Glycine max GLYMA15G10830 N
Gorai.006G255400 Gossypium raimondii Gorai.006G255400 N
MDP0000254218 Malus domestica MDP0000254218 N
MDP0000295749 Malus domestica MDP0000295749 N
cassava1998.valid.m1 Manihot esculenta cassava1998.valid.m1 N
mgf011099m Mimulus guttatus mgf011099m N
mgf010461m Mimulus guttatus mgf010461m N
POPTR_0008s20380 Populus trichocarpa POPTR_0008s20380 N
POPTR_0010s03000 Populus trichocarpa POPTR_0010s03000 N
Pm008044 Prunus mume Pm008044 N
PRUPE_ppa001884mg Prunus persica PRUPE_ppa001884mg N
SapurV1A.0152s0560 Salix purpurea SapurV1A.0152s0560 N
SapurV1A.0407s0270 Salix purpurea SapurV1A.0407s0270 N
SapurV1A.1026s0020 Salix purpurea SapurV1A.1026s0020 N
TCM_021065 Theobroma cacao TCM_021065 N