CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Bra030325
(
Brassica rapa
)
CSD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00313 (CSD)
IPR002059
Bra030325
T164306_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CSP4
M01902_2.00
Arabidopsis thaliana
AAWAAAAM
KTTTTWTT
PBM
Weirauch et al.(2014)
pTH7494
0.894
0.894
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra030325.1-P
CSD
13
79
RKGSVKWFDTQKGFGFITPDDGGEDLFVHQSSIRSEGYRSLAPEESVEFEVEVDNSGRTKAIEVSGP
Links
Other
CSD
family TFs
Other
Brassica rapa
TFs
22 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ATGRP2B
Arabidopsis lyrata
fgenesh2_kg.4__14__AT2G21060.1
I
0.894
GRP2
Arabidopsis lyrata
scaffold_700059.1
I
0.848
CSP2
Arabidopsis thaliana
AT4G38680
I
0.864
CSP4
Arabidopsis thaliana
AT2G21060
D
0.894
Bostr.25542s0051
Boechera stricta
Bostr.25542s0051
I
0.879
Bo3g141510
Brassica oleracea
Bo3g141510
I
0.818
Bo4g145670
Brassica oleracea
Bo4g145670
I
0.970
Bo7g049880
Brassica oleracea
Bo7g049880
I
0.848
Bo8g102040
Brassica oleracea
Bo8g102040
I
0.924
Bra031159
Brassica rapa
Bra031159
I
0.924
Cagra.2961s0009
Capsella grandiflora
Cagra.2961s0009
I
0.894
evm.TU.supercontig_37.170
Carica papaya
evm.TU.supercontig_37.170
N
0.712
Ca_11038
Cicer arietinum
Ca_11038
N
0.712
Gorai.002G195000
Gossypium raimondii
Gorai.002G195000
I
0.712
Gorai.002G195100
Gossypium raimondii
Gorai.002G195100
I
0.712
cassava12557.valid.m1
Manihot esculenta
cassava12557.valid.m1
N
0.742
cassava29163.valid.m1
Manihot esculenta
cassava29163.valid.m1
N
0.712
POPTR_0009s13460
Populus trichocarpa
POPTR_0009s13460
N
0.712
SapurV1A.0514s0160
Salix purpurea
SapurV1A.0514s0160
N
0.712
Solyc10g055250.1
Solanum lycopersicum
Solyc10g055250.1
I
0.727
PGSC0003DMG400023206
Solanum tuberosum
PGSC0003DMG400023206
I
0.727
VIT_03s0038g02130
Vitis vinifera
VIT_03s0038g02130
I
0.727