PGSC0003DMG400023206 (Solanum tuberosum)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 PGSC0003DMG400023206 T165080_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CSP4
M01902_2.00 		Arabidopsis thaliana
AAWAAAAM
KTTTTWTT		 PBM
Weirauch et al.(2014)
pTH7494 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400059695 CSD 11 77
PGSC0003DMT400059696 CSD 11 77

Links

Other CSD family TFs
Other Solanum tuberosum TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc10g055250.1 Solanum lycopersicum Solyc10g055250.1 I 0.924
VIT_03s0038g02130 Vitis vinifera VIT_03s0038g02130 I 0.818
Solyc01g111300.2 Solanum lycopersicum Solyc01g111300.2 N 0.788
Ca_11038 Cicer arietinum Ca_11038 N 0.788
cassava29163.valid.m1 Manihot esculenta cassava29163.valid.m1 N 0.773
mgf001526m Mimulus guttatus mgf001526m N 0.773
mgf014458m Mimulus guttatus mgf014458m N 0.773
mgf015980m Mimulus guttatus mgf015980m I 0.773
Gorai.005G253200 Gossypium raimondii Gorai.005G253200 I 0.773
CSP2 Arabidopsis thaliana AT4G38680 I 0.758
GLYMA11G11290 Glycine max GLYMA11G11290 N 0.758
PGSC0003DMG400001590 Solanum tuberosum PGSC0003DMG400001590 N 0.758
PGSC0003DMG400001591 Solanum tuberosum PGSC0003DMG400001591 N 0.758
GRP2 Arabidopsis lyrata scaffold_700059.1 I 0.758
Pm020837 Prunus mume Pm020837 I 0.758
cassava12557.valid.m1 Manihot esculenta cassava12557.valid.m1 N 0.758
Bostr.25542s0051 Boechera stricta Bostr.25542s0051 I 0.758
Cagra.2961s0009 Capsella grandiflora Cagra.2961s0009 I 0.758
PGSC0003DMG400045717 Solanum tuberosum PGSC0003DMG400045717 N 0.750
AMTR_s00041p00167350 Amborella trichopoda AMTR_s00041p00167350 N 0.742
Bo4g145670 Brassica oleracea Bo4g145670 I 0.742
Bo8g102040 Brassica oleracea Bo8g102040 I 0.742
Bra031159 Brassica rapa Bra031159 I 0.742
ATGRP2B Arabidopsis lyrata fgenesh2_kg.4__14__AT2G21060.1 I 0.742
Solyc01g111280.2 Solanum lycopersicum Solyc01g111280.2 N 0.742
gene07618-v1.0-hybrid Fragaria vesca gene07618-v1.0-hybrid N 0.742
Gorai.002G003500 Gossypium raimondii Gorai.002G003500 N 0.742
Gorai.002G195000 Gossypium raimondii Gorai.002G195000 I 0.742
Gorai.002G195100 Gossypium raimondii Gorai.002G195100 I 0.742
MDP0000155077 Malus domestica MDP0000155077 N 0.742
MDP0000202739 Malus domestica MDP0000202739 N 0.742
CSP4 Arabidopsis thaliana AT2G21060 D 0.727
Bra030325 Brassica rapa Bra030325 I 0.727
GLYMA12G03470 Glycine max GLYMA12G03470 N 0.727
POPTR_0009s13460 Populus trichocarpa POPTR_0009s13460 N 0.727
Cla016088 Citrullus lanatus Cla016088 N 0.727
Cucsa.381750 Cucumis sativus Cucsa.381750 N 0.727
MDP0000225222 Malus domestica MDP0000225222 N 0.727
SapurV1A.0117s0150 Salix purpurea SapurV1A.0117s0150 N 0.727
SapurV1A.0514s0160 Salix purpurea SapurV1A.0514s0160 N 0.727
BGIOSGA027713 Oryza indica BGIOSGA027713 N 0.712
Bo3g141510 Brassica oleracea Bo3g141510 I 0.712
BRADI3G01960 Brachypodium distachyon BRADI3G01960 N 0.712
CHLREDRAFT_126810 Chlamydomonas reinhardtii CHLREDRAFT_126810 N 0.712
GLYMA04G00660 Glycine max GLYMA04G00660 N 0.712
GRMZM2G389768 Zea mays GRMZM2G389768 N 0.712
LPERR08G02000 Leersia perrieri LPERR08G02000 N 0.712
OGLUM08G01920 Oryza glumaepatula OGLUM08G01920 N 0.712
OMERI08G01940 Oryza meridionalis OMERI08G01940 N 0.712
ONIVA08G01720 Oryza nivara ONIVA08G01720 N 0.712
ORGLA08G0012100 Oryza glaberrima ORGLA08G0012100 N 0.712
ORUFI08G02050 Oryza rufipogon ORUFI08G02050 N 0.712
OS08G0129200 Oryza sativa OS08G0129200 N 0.712
POPTR_0004s17840 Populus trichocarpa POPTR_0004s17840 N 0.712
Sb04g001720 Sorghum bicolor Sb04g001720 N 0.712
Traes_6AS_539B381F1 Triticum aestivum Traes_6AS_539B381F1 N 0.712
estExt_fgenesh1_pg.C_10541 Coccomyxa subellipsoidea C169 estExt_fgenesh1_pg.C_10541 N 0.712
evm.TU.supercontig_37.170 Carica papaya evm.TU.supercontig_37.170 N 0.712
Pavir.J33226 Panicum virgatum Pavir.J33226 N 0.712
PK03316.1 Cannabis sativa PK03316.1 N 0.712
chr3.CM0112.180.nd Lotus japonicus chr3.CM0112.180.nd N 0.712
estExt_fgeneshCV_pm.C_10002 Chlorella vulgaris estExt_fgeneshCV_pm.C_10002 N 0.712
Eucgr.I01395 Eucalyptus grandis Eucgr.I01395 N 0.707
IGS.gm_9_00317 Chlorella NC64A IGS.gm_9_00317 N 0.705