CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PGSC0003DMG400001590
(
Solanum tuberosum
)
CSD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00313 (CSD)
IPR002059
PGSC0003DMG400001590
T165077_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGSC0003DMT400004028
CSD
9
75
LTGIVKWFSDQKGFGFITPSDGSEDLFVHQSGIRSEGFRSLAEGEEVEYQIESGSDGRAKACDVTGP
Links
Other
CSD
family TFs
Other
Solanum tuberosum
TFs
54 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Solyc01g111300.2
Solanum lycopersicum
Solyc01g111300.2
N
0.924
cassava12557.valid.m1
Manihot esculenta
cassava12557.valid.m1
N
0.818
cassava29163.valid.m1
Manihot esculenta
cassava29163.valid.m1
N
0.818
GLYMA11G11290
Glycine max
GLYMA11G11290
N
0.803
PGSC0003DMG400001591
Solanum tuberosum
PGSC0003DMG400001591
N
0.803
GLYMA12G03470
Glycine max
GLYMA12G03470
N
0.788
Ca_11038
Cicer arietinum
Ca_11038
N
0.788
Lus10005066.g
Linum usitatissimum
Lus10005066.g
N
0.788
Lus10027839.g
Linum usitatissimum
Lus10027839.g
N
0.788
Solyc01g111280.2
Solanum lycopersicum
Solyc01g111280.2
N
0.773
VIT_03s0038g02130
Vitis vinifera
VIT_03s0038g02130
I
0.773
Pm020837
Prunus mume
Pm020837
I
0.773
Gorai.005G253200
Gossypium raimondii
Gorai.005G253200
I
0.773
Lus10025058.g
Linum usitatissimum
Lus10025058.g
N
0.773
SapurV1A.0117s0150
Salix purpurea
SapurV1A.0117s0150
N
0.773
PGSC0003DMG400023206
Solanum tuberosum
PGSC0003DMG400023206
I
0.758
Solyc10g055250.1
Solanum lycopersicum
Solyc10g055250.1
I
0.758
gene07618-v1.0-hybrid
Fragaria vesca
gene07618-v1.0-hybrid
N
0.758
Gorai.002G195000
Gossypium raimondii
Gorai.002G195000
I
0.758
Gorai.002G195100
Gossypium raimondii
Gorai.002G195100
I
0.758
MDP0000225222
Malus domestica
MDP0000225222
N
0.758
PK03316.1
Cannabis sativa
PK03316.1
N
0.758
GRMZM2G389768
Zea mays
GRMZM2G389768
N
0.742
POPTR_0004s17840
Populus trichocarpa
POPTR_0004s17840
N
0.742
Sb04g001720
Sorghum bicolor
Sb04g001720
N
0.742
VIT_04s0023g03520
Vitis vinifera
VIT_04s0023g03520
N
0.742
Cla016088
Citrullus lanatus
Cla016088
N
0.742
Cucsa.381750
Cucumis sativus
Cucsa.381750
N
0.742
mgf001526m
Mimulus guttatus
mgf001526m
N
0.742
mgf014458m
Mimulus guttatus
mgf014458m
N
0.742
mgf015980m
Mimulus guttatus
mgf015980m
I
0.742
evm.TU.supercontig_37.170
Carica papaya
evm.TU.supercontig_37.170
N
0.742
MDP0000155077
Malus domestica
MDP0000155077
N
0.742
MDP0000202739
Malus domestica
MDP0000202739
N
0.742
Pavir.J33226
Panicum virgatum
Pavir.J33226
N
0.742
Eucgr.I01395
Eucalyptus grandis
Eucgr.I01395
N
0.741
POPTR_0009s13460
Populus trichocarpa
POPTR_0009s13460
N
0.727
Gorai.002G003500
Gossypium raimondii
Gorai.002G003500
N
0.727
Pavir.J33349
Panicum virgatum
Pavir.J33349
N
0.727
SapurV1A.0514s0160
Salix purpurea
SapurV1A.0514s0160
N
0.727
Pavir.Ab00211
Panicum virgatum
Pavir.Ab00211
N
0.714
BGIOSGA007226
Oryza indica
BGIOSGA007226
N
0.712
BRADI3G01960
Brachypodium distachyon
BRADI3G01960
N
0.712
OGLUM02G01470
Oryza glumaepatula
OGLUM02G01470
N
0.712
OMERI02G00930
Oryza meridionalis
OMERI02G00930
N
0.712
ONIVA02G01490
Oryza nivara
ONIVA02G01490
N
0.712
OPUNC02G01060
Oryza punctata
OPUNC02G01060
N
0.712
ORUFI02G01580
Oryza rufipogon
ORUFI02G01580
N
0.712
OS02G0121100
Oryza sativa
OS02G0121100
N
0.712
PRUPE_ppa010531mg
Prunus persica
PRUPE_ppa010531mg
N
0.712
Traes_6AS_539B381F1
Triticum aestivum
Traes_6AS_539B381F1
N
0.712
Pm026767
Prunus mume
Pm026767
N
0.712
AZW_EuGene.0000110131
Micromonas pusilla
AZW_EuGene.0000110131
N
0.712
chr3.CM0112.180.nd
Lotus japonicus
chr3.CM0112.180.nd
N
0.712