Solyc10g055250.1 (Solanum lycopersicum)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 Solyc10g055250.1 T165163_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CSP4
M01902_2.00 		Arabidopsis thaliana
AAWAAAAM
KTTTTWTT		 PBM
Weirauch et al.(2014)
pTH7494 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc10g055250.1.1 CSD 11 77

Links

Other CSD family TFs
Other Solanum lycopersicum TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400023206 Solanum tuberosum PGSC0003DMG400023206 I 0.924
VIT_03s0038g02130 Vitis vinifera VIT_03s0038g02130 I 0.803
Solyc01g111300.2 Solanum lycopersicum Solyc01g111300.2 N 0.788
Pm020837 Prunus mume Pm020837 I 0.788
MDP0000155077 Malus domestica MDP0000155077 N 0.773
MDP0000202739 Malus domestica MDP0000202739 N 0.773
PK26692.1 Cannabis sativa PK26692.1 I 0.766
ATGRP2B Arabidopsis lyrata fgenesh2_kg.4__14__AT2G21060.1 I 0.758
PGSC0003DMG400001590 Solanum tuberosum PGSC0003DMG400001590 N 0.758
Ca_11038 Cicer arietinum Ca_11038 N 0.758
cassava12557.valid.m1 Manihot esculenta cassava12557.valid.m1 N 0.758
cassava29163.valid.m1 Manihot esculenta cassava29163.valid.m1 N 0.758
gene07618-v1.0-hybrid Fragaria vesca gene07618-v1.0-hybrid N 0.758
Gorai.005G253200 Gossypium raimondii Gorai.005G253200 I 0.758
MDP0000225222 Malus domestica MDP0000225222 N 0.758
PGSC0003DMG400045717 Solanum tuberosum PGSC0003DMG400045717 N 0.750
PK11650.1 Cannabis sativa PK11650.1 N 0.750
GLYMA11G11290 Glycine max GLYMA11G11290 N 0.742
GRMZM2G389768 Zea mays GRMZM2G389768 N 0.742
PGSC0003DMG400001591 Solanum tuberosum PGSC0003DMG400001591 N 0.742
POPTR_0009s13460 Populus trichocarpa POPTR_0009s13460 N 0.742
Sb04g001720 Sorghum bicolor Sb04g001720 N 0.742
mgf001526m Mimulus guttatus mgf001526m N 0.742
mgf014458m Mimulus guttatus mgf014458m N 0.742
mgf015980m Mimulus guttatus mgf015980m I 0.742
Bostr.25542s0051 Boechera stricta Bostr.25542s0051 I 0.742
Cagra.2961s0009 Capsella grandiflora Cagra.2961s0009 I 0.742
Gorai.002G003500 Gossypium raimondii Gorai.002G003500 N 0.742
Pavir.J33226 Panicum virgatum Pavir.J33226 N 0.742
SapurV1A.0514s0160 Salix purpurea SapurV1A.0514s0160 N 0.742
CSP4 Arabidopsis thaliana AT2G21060 D 0.727
CSP2 Arabidopsis thaliana AT4G38680 I 0.727
Bo4g145670 Brassica oleracea Bo4g145670 I 0.727
Bo8g102040 Brassica oleracea Bo8g102040 I 0.727
Bra030325 Brassica rapa Bra030325 I 0.727
Bra031159 Brassica rapa Bra031159 I 0.727
POPTR_0004s17840 Populus trichocarpa POPTR_0004s17840 N 0.727
GRP2 Arabidopsis lyrata scaffold_700059.1 I 0.727
Solyc01g111280.2 Solanum lycopersicum Solyc01g111280.2 N 0.727
Traes_6AS_539B381F1 Triticum aestivum Traes_6AS_539B381F1 N 0.727
Cla016088 Citrullus lanatus Cla016088 N 0.727
Cucsa.381750 Cucumis sativus Cucsa.381750 N 0.727
Gorai.002G195000 Gossypium raimondii Gorai.002G195000 I 0.727
Gorai.002G195100 Gossypium raimondii Gorai.002G195100 I 0.727
Pavir.J33349 Panicum virgatum Pavir.J33349 N 0.727
SapurV1A.0117s0150 Salix purpurea SapurV1A.0117s0150 N 0.727
PK03316.1 Cannabis sativa PK03316.1 N 0.727
Pavir.Ab00211 Panicum virgatum Pavir.Ab00211 N 0.714
AMTR_s00041p00167350 Amborella trichopoda AMTR_s00041p00167350 N 0.712
BGIOSGA027713 Oryza indica BGIOSGA027713 N 0.712
Bo3g141510 Brassica oleracea Bo3g141510 I 0.712
BRADI1G02650 Brachypodium distachyon BRADI1G02650 N 0.712
BRADI3G01960 Brachypodium distachyon BRADI3G01960 N 0.712
CHLREDRAFT_126810 Chlamydomonas reinhardtii CHLREDRAFT_126810 N 0.712
GLYMA04G00660 Glycine max GLYMA04G00660 N 0.712
GLYMA12G03470 Glycine max GLYMA12G03470 N 0.712
LPERR08G02000 Leersia perrieri LPERR08G02000 N 0.712
OGLUM08G01920 Oryza glumaepatula OGLUM08G01920 N 0.712
OMERI08G01940 Oryza meridionalis OMERI08G01940 N 0.712
ONIVA08G01720 Oryza nivara ONIVA08G01720 N 0.712
ORGLA08G0012100 Oryza glaberrima ORGLA08G0012100 N 0.712
ORUFI08G02050 Oryza rufipogon ORUFI08G02050 N 0.712
OS08G0129200 Oryza sativa OS08G0129200 N 0.712
VIT_04s0023g03520 Vitis vinifera VIT_04s0023g03520 N 0.712
estExt_fgenesh1_pg.C_10541 Coccomyxa subellipsoidea C169 estExt_fgenesh1_pg.C_10541 N 0.712
evm.TU.supercontig_37.170 Carica papaya evm.TU.supercontig_37.170 N 0.712
fgenesh1_pg.1_#_433 Coccomyxa subellipsoidea C169 fgenesh1_pg.1_#_433 N 0.712
e_gw1.1.536.1 Chlorella vulgaris e_gw1.1.536.1 N 0.712
estExt_fgeneshCV_pm.C_10002 Chlorella vulgaris estExt_fgeneshCV_pm.C_10002 N 0.712
IGS.gm_9_00317 Chlorella NC64A IGS.gm_9_00317 N 0.705