Pm020837 (Prunus mume)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00313 (CSD) IPR002059 Pm020837 T165332_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CSP4
M01902_2.00 		Arabidopsis thaliana
AAWAAAAM
KTTTTWTT		 PBM
Weirauch et al.(2014)
pTH7494 		0.712 0.712
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm020837 CSD 5 71

Links

Other CSD family TFs
Other Prunus mume TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gene07618-v1.0-hybrid Fragaria vesca gene07618-v1.0-hybrid N 0.909
MDP0000225222 Malus domestica MDP0000225222 N 0.879
MDP0000155077 Malus domestica MDP0000155077 N 0.864
MDP0000202739 Malus domestica MDP0000202739 N 0.864
VIT_03s0038g02130 Vitis vinifera VIT_03s0038g02130 I 0.848
cassava29163.valid.m1 Manihot esculenta cassava29163.valid.m1 N 0.848
Gorai.005G253200 Gossypium raimondii Gorai.005G253200 I 0.833
Eucgr.I01395 Eucalyptus grandis Eucgr.I01395 N 0.828
evm.TU.supercontig_37.170 Carica papaya evm.TU.supercontig_37.170 N 0.818
cassava12557.valid.m1 Manihot esculenta cassava12557.valid.m1 N 0.803
Lus10005066.g Linum usitatissimum Lus10005066.g N 0.803
Lus10027839.g Linum usitatissimum Lus10027839.g N 0.803
GLYMA12G03470 Glycine max GLYMA12G03470 N 0.788
Solyc01g111300.2 Solanum lycopersicum Solyc01g111300.2 N 0.788
Solyc10g055250.1 Solanum lycopersicum Solyc10g055250.1 I 0.788
Cla016088 Citrullus lanatus Cla016088 N 0.788
Cucsa.381750 Cucumis sativus Cucsa.381750 N 0.788
SapurV1A.0117s0150 Salix purpurea SapurV1A.0117s0150 N 0.788
GLYMA11G11290 Glycine max GLYMA11G11290 N 0.773
PGSC0003DMG400001590 Solanum tuberosum PGSC0003DMG400001590 N 0.773
PK03316.1 Cannabis sativa PK03316.1 N 0.773
BRADI3G01960 Brachypodium distachyon BRADI3G01960 N 0.758
PGSC0003DMG400023206 Solanum tuberosum PGSC0003DMG400023206 I 0.758
POPTR_0004s17840 Populus trichocarpa POPTR_0004s17840 N 0.758
POPTR_0009s13460 Populus trichocarpa POPTR_0009s13460 N 0.758
VIT_04s0023g03520 Vitis vinifera VIT_04s0023g03520 N 0.758
gene26519-v1.0-hybrid Fragaria vesca gene26519-v1.0-hybrid N 0.758
Lus10025058.g Linum usitatissimum Lus10025058.g N 0.758
SapurV1A.0514s0160 Salix purpurea SapurV1A.0514s0160 N 0.758
SELMODRAFT_186937 Selaginella moellendorffii SELMODRAFT_186937 N 0.742
SELMODRAFT_187582 Selaginella moellendorffii SELMODRAFT_187582 N 0.742
Ca_11038 Cicer arietinum Ca_11038 N 0.742
mgf001526m Mimulus guttatus mgf001526m N 0.742
mgf014458m Mimulus guttatus mgf014458m N 0.742
mgf015980m Mimulus guttatus mgf015980m I 0.742
estExt_fgenesh1_pg.C_10541 Coccomyxa subellipsoidea C169 estExt_fgenesh1_pg.C_10541 N 0.742
Gorai.002G195000 Gossypium raimondii Gorai.002G195000 I 0.742
Gorai.002G195100 Gossypium raimondii Gorai.002G195100 I 0.742
chr3.CM0112.180.nd Lotus japonicus chr3.CM0112.180.nd N 0.742
estExt_fgeneshCV_pm.C_10002 Chlorella vulgaris estExt_fgeneshCV_pm.C_10002 N 0.742
AMTR_s00041p00167350 Amborella trichopoda AMTR_s00041p00167350 N 0.727
BGIOSGA007226 Oryza indica BGIOSGA007226 N 0.727
ATGRP2B Arabidopsis lyrata fgenesh2_kg.4__14__AT2G21060.1 I 0.727
GRMZM2G389768 Zea mays GRMZM2G389768 N 0.727
LPERR02G01370 Leersia perrieri LPERR02G01370 N 0.727
OBART02G01600 Oryza barthii OBART02G01600 N 0.727
OGLUM02G01470 Oryza glumaepatula OGLUM02G01470 N 0.727
OMERI02G00930 Oryza meridionalis OMERI02G00930 N 0.727
ONIVA02G01490 Oryza nivara ONIVA02G01490 N 0.727
OPUNC02G01060 Oryza punctata OPUNC02G01060 N 0.727
ORGLA02G0014700 Oryza glaberrima ORGLA02G0014700 N 0.727
ORUFI02G01580 Oryza rufipogon ORUFI02G01580 N 0.727
OS02G0121100 Oryza sativa OS02G0121100 N 0.727
Sb04g001720 Sorghum bicolor Sb04g001720 N 0.727
Traes_6AS_539B381F1 Triticum aestivum Traes_6AS_539B381F1 N 0.727
estExt_gwp_gw1.C_410063 Physcomitrella patens estExt_gwp_gw1.C_410063 N 0.727
estExt_gwp_gw1.C_640002 Physcomitrella patens estExt_gwp_gw1.C_640002 N 0.727
fgenesh1_pg.1_#_433 Coccomyxa subellipsoidea C169 fgenesh1_pg.1_#_433 N 0.727
Pavir.J33226 Panicum virgatum Pavir.J33226 N 0.727
Pavir.J33349 Panicum virgatum Pavir.J33349 N 0.727
e_gw1.1.536.1 Chlorella vulgaris e_gw1.1.536.1 N 0.727
CSP4 Arabidopsis thaliana AT2G21060 D 0.712
Bo3g141510 Brassica oleracea Bo3g141510 I 0.712
BRADI1G02650 Brachypodium distachyon BRADI1G02650 N 0.712
GLYMA04G00660 Glycine max GLYMA04G00660 N 0.712
PGSC0003DMG400001591 Solanum tuberosum PGSC0003DMG400001591 N 0.712
gw1.103.78.1 Physcomitrella patens gw1.103.78.1 N 0.712
Bostr.25542s0051 Boechera stricta Bostr.25542s0051 I 0.712
Cagra.2961s0009 Capsella grandiflora Cagra.2961s0009 I 0.712
Gorai.002G003500 Gossypium raimondii Gorai.002G003500 N 0.712
MDP0000121628 Malus domestica MDP0000121628 N 0.712
chr6.CM0045.280.nd Lotus japonicus chr6.CM0045.280.nd N 0.712