CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bostr.10689s0057 *(Boechera stricta)* Dof
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF02701 (zf-Dof)	IPR003851	Bostr.10689s0057	T171623_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
DOF4.3 M06857_2.00	Arabidopsis thaliana	AAAGNYRCTTT	AAAGYRNCTTT	Dap-seq OMalley et al.(2016) dof43_col_a	0.793	0.793
DOF4.3 M06858_2.00	Arabidopsis thaliana	NWAAAGHRVCTTTW	WAAAGBYDCTTTWN	Dap-seq OMalley et al.(2016) dof43_colamp_a	0.793	0.793
DOF4.5 M06859_2.00	Arabidopsis thaliana	AAAKYHDCTTTWTN	NAWAAAGHDRMTTT	Dap-seq OMalley et al.(2016) dof45_col_a	0.793	0.793
DOF4.5 M06860_2.00	Arabidopsis thaliana	WAAAGYYDCTTTWDN	NHWAAAGHRRCTTTW	Dap-seq OMalley et al.(2016) dof45_colamp_a	0.793	0.793
PBF M02675_2.00	Zea mays	RCTTT	AAAGY	SELEX Mathelier et al.(2014) MA0064.1	0.759	0.759
PBF M10438_2.00	Zea mays	BBDCTTTWNWD	HWNWAAAGHVV	Transfac Matys et al.(2006) P$PBF_01	0.759	0.759
Q6RK62_WHEAT M10441_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PBF_Q2_01	0.759	0.759
DOF3.2 M01943_2.00	Arabidopsis thaliana	NHDNNNNN	NNNNNHDN	PBM Weirauch et al.(2014) pTH7183	0.741	0.741
DOF5.7 M00862_2.00	Arabidopsis thaliana	NNNCKTTN	NAAMGNNN	PBM Franco-Zorrilla et al.(2014) Dof5.7	0.741	0.741
DOF3.2 M06847_2.00	Arabidopsis thaliana	NYHVCTTTTTNNHHTHHNN	NNDDADDNNAAAAAGBDRN	Dap-seq OMalley et al.(2016) At3g45610_col_a	0.741	0.741
DOF3.2 M06848_2.00	Arabidopsis thaliana	NNHDDYHVCTTTTTB	VAAAAAGBDRHHDNN	Dap-seq OMalley et al.(2016) At3g45610_colamp_a	0.741	0.741
DOF1.8 M01939_2.00	Arabidopsis thaliana	NNNCKTTHNN	NNDAAMGNNN	PBM Weirauch et al.(2014) pTH7256	0.724	0.724
DOF1.8 M01062_2.00	Arabidopsis thaliana	NHVCTTTWH	DWAAAGBDN	PBM Sullivan et al.(2014) pTH7653	0.724	0.724
DOF2.5 M01212_2.00	Arabidopsis thaliana	NNNCKTTWNN	NNWAAMGNNN	PBM Lambert et al.(2019) pTH11562	0.724	0.724
DOF4.7 M01945_2.00	Arabidopsis thaliana	NCKTTHNNN	NNNDAAMGN	PBM Weirauch et al.(2014) pTH7189	0.724	0.724
DOF5.3 M01947_2.00	Arabidopsis thaliana	CKTTNNN	NNNAAMG	PBM Weirauch et al.(2014) pTH7182	0.724	0.724
DOF5.4 M01948_2.00	Arabidopsis thaliana	NDCGTTAWCN	NGWTAACGHN	PBM Weirauch et al.(2014) pTH7160	0.724	0.724
DOF5.4 M01949_2.00	Arabidopsis thaliana	NWACGTTWHNN	NNDWAACGTWN	PBM Weirauch et al.(2014) pTH7535	0.724	0.724
DOF5.6 M01063_2.00	Arabidopsis thaliana	NYDDWNNNN	NNNNWHHRN	PBM Sullivan et al.(2014) pTH7192	0.724	0.724
DOF5.6 M01950_2.00	Arabidopsis thaliana	NCKTTWNN	NNWAAMGN	PBM Weirauch et al.(2014) pTH7655	0.724	0.724
DOF1.8 M06835_2.00	Arabidopsis thaliana	WWWYHMCTTTTTNNNHNHW	WDNDNNNAAAAAGKDRWWW	Dap-seq OMalley et al.(2016) At1g64620_100ng20cy_b	0.724	0.724
DOF1.8 M06836_2.00	Arabidopsis thaliana	NHHMCTTTTTN	NAAAAAGKDDN	Dap-seq OMalley et al.(2016) At1g64620_colamp_a	0.724	0.724
DOF4.7 M06861_2.00	Arabidopsis thaliana	HHHHYHHHNHHHHHHHWWTWWCTTTTTN	NAAAAAGWWAWWDDDDDDDNDDDRDDDD	Dap-seq OMalley et al.(2016) At4g38000_col_a	0.724	0.724
DOF4.7 M06862_2.00	Arabidopsis thaliana	NYWACTTTWTB	VAWAAAGTWRN	Dap-seq OMalley et al.(2016) At4g38000_colamp_a	0.724	0.724
DOF5.6 M06867_2.00	Arabidopsis thaliana	HHTYHNCTTTTTNHHHHHHHH	DDDDDDDDNAAAAAGNDRADD	Dap-seq OMalley et al.(2016) At5g62940_col_a	0.724	0.724
DOF2.5 M06843_2.00	Arabidopsis thaliana	DYHMCTTTTTN	NAAAAAGKDRH	Dap-seq OMalley et al.(2016) DAG2_col_a	0.724	0.724
DOF2.5 M06844_2.00	Arabidopsis thaliana	HWDYHMCTTTTTN	NAAAAAGKDRHWD	Dap-seq OMalley et al.(2016) DAG2_colamp_a	0.724	0.724
DOF5.4 M06865_2.00	Arabidopsis thaliana	DNWNYHMCTTTTTN	NAAAAAGKDRNWNH	Dap-seq OMalley et al.(2016) OBP4_col_a	0.724	0.724
DOF5.4 M06866_2.00	Arabidopsis thaliana	HWDYHVCTTTTTNNNHHNH	DNDDNNNAAAAAGBDRHWD	Dap-seq OMalley et al.(2016) OBP4_colamp_a	0.724	0.724
PK14080.1 M01218_2.00	Cannabis sativa	NCDTTHNN	NNDAAHGN	PBM Lambert et al.(2019) pTH10123	0.707	0.707
PK20317.1 M01221_2.00	Cannabis sativa	CKTTWNN	NNWAAMG	PBM Lambert et al.(2019) pTH11298	0.707	0.707
PK20555.1 M01222_2.00	Cannabis sativa	NNNCTTTWNN	NNWAAAGNNN	PBM Lambert et al.(2019) pTH10144	0.707	0.707
e_gw1.170.52.1 M01952_2.00	Physcomitrella patens	NNNCTTTHNN	NNDAAAGNNN	PBM Weirauch et al.(2014) pTH8464	0.690	0.690
gw1.12.257.1 M01955_2.00	Physcomitrella patens	NNDDNNN	NNNHHNN	PBM Weirauch et al.(2014) pTH8651	0.690	0.690
PK05671.1 M01215_2.00	Cannabis sativa	NCDWWNNN	NNNWWHGN	PBM Lambert et al.(2019) pTH10101	0.690	0.690
PK07031.1 M01216_2.00	Cannabis sativa	NCKTTHN	NDAAMGN	PBM Lambert et al.(2019) pTH11435	0.690	0.690
PK10955.1 M01217_2.00	Cannabis sativa	VCTTTWNN	NNWAAAGB	PBM Lambert et al.(2019) pTH10264	0.690	0.690
PK15337.1 M01219_2.00	Cannabis sativa	NCTTTHN	NDAAAGN	PBM Lambert et al.(2019) pTH10186	0.690	0.690
DOF1.7 M06833_2.00	Arabidopsis thaliana	HNNHWTYWNCTTTTYNHNHHN	NDDNDNRAAAAGNWRAWDNND	Dap-seq OMalley et al.(2016) Adof1_col_a	0.690	0.690
DOF1.7 M06834_2.00	Arabidopsis thaliana	NNHNNYWRCTTTTTNNHHNNH	DNNDDNNAAAAAGYWRNNDNN	Dap-seq OMalley et al.(2016) Adof1_colamp_a	0.690	0.690
AT3G52440 M06852_2.00	Arabidopsis thaliana	DYHMCTTTWTN	NAWAAAGKDRH	Dap-seq OMalley et al.(2016) AT3G52440_col_a	0.690	0.690
AT3G52440 M06853_2.00	Arabidopsis thaliana	WWDDYHMCTTTTTNNHHYYWW	WWRRDDNNAAAAAGKDRHHWW	Dap-seq OMalley et al.(2016) AT3G52440_colamp_a	0.690	0.690
PK01144.1 M01213_2.00	Cannabis sativa	NCTTTWN	NWAAAGN	PBM Lambert et al.(2019) pTH10160	0.672	0.672
DOF2.4 M01940_2.00	Arabidopsis thaliana	NCKTTWN	NWAAMGN	PBM Weirauch et al.(2014) pTH7912	0.655	0.655
DOF3.1 M01942_2.00	Arabidopsis thaliana	NCKTTNNN	NNNAAMGN	PBM Weirauch et al.(2014) pTH8190	0.655	0.655
PK03929.1 M01214_2.00	Cannabis sativa	NNNCTTTWNN	NNWAAAGNNN	PBM Lambert et al.(2019) pTH10165	0.655	0.655
PK23763.1 M01224_2.00	Cannabis sativa	NNNCTTTWN	NWAAAGNNN	PBM Lambert et al.(2019) pTH10194	0.655	0.655
DOF5.1 M06863_2.00	Arabidopsis thaliana	HYHYWYHHHYTTWNCTTTTTN	NAAAAAGNWAARDDDRWRDRD	Dap-seq OMalley et al.(2016) AT5G02460_col_a	0.655	0.655
DOF5.1 M06864_2.00	Arabidopsis thaliana	NHDYHRCTTTWTNNHNNHN	NDNNDNNAWAAAGYDRHDN	Dap-seq OMalley et al.(2016) AT5G02460_colamp_a	0.655	0.655
DOF5.8 M06868_2.00	Arabidopsis thaliana	HHNHHYHHHHYTTTHNCTTTTKNNHHNHW	WDNDDNNMAAAAGNDAAARDDDDRDDNDD	Dap-seq OMalley et al.(2016) AT5G66940_col_a	0.655	0.655
DOF5.8 M06869_2.00	Arabidopsis thaliana	NNHNDYWRCTTTTTNNHYHNH	DNDRDNNAAAAAGYWRHNDNN	Dap-seq OMalley et al.(2016) AT5G66940_colamp_a	0.655	0.655
DOF2.4 M06841_2.00	Arabidopsis thaliana	HHWWTTHMCTTTTTN	NAAAAAGKDAAWWDD	Dap-seq OMalley et al.(2016) dof24_col_a	0.655	0.655
DOF2.4 M06842_2.00	Arabidopsis thaliana	HHMCTTTWTNNNNHN	NDNNNNAWAAAGKDD	Dap-seq OMalley et al.(2016) dof24_colamp_a	0.655	0.655
DOF4.2 M06856_2.00	Arabidopsis thaliana	NNHWWWRCCTTTTTNNHNH	DNDNNAAAAAGGYWWWDNN	Dap-seq OMalley et al.(2016) dof42_col_a	0.655	0.655
DOF2.2 M06839_2.00	Arabidopsis thaliana	HHHYHHHHYWTYHNCTTTTTN	NAAAAAGNDRAWRDDDDRDDD	Dap-seq OMalley et al.(2016) AT2G28810_col_a	0.638	0.638
DOF2.2 M06840_2.00	Arabidopsis thaliana	NYHNCTTTWTNNNHH	DDNNNAWAAAGNDRN	Dap-seq OMalley et al.(2016) AT2G28810_colamp_a	0.638	0.638
DOF3.4 M06851_2.00	Arabidopsis thaliana	NNNHYHYHHHWYYHNCTTTWB	VWAAAGNDRRWDDDRDRDNNN	Dap-seq OMalley et al.(2016) OBP1_col_a	0.638	0.638
OBP3 M06854_2.00	Arabidopsis thaliana	BTHWCTTTTYNHYTTYWYYHH	DDRRWRAARDNRAAAAGWDAV	Dap-seq OMalley et al.(2016) OBP3_col_a	0.638	0.638
OBP3 M06855_2.00	Arabidopsis thaliana	NHNWHNHHNYWNCTTTTYN	NRAAAAGNWRNDDNDWNDN	Dap-seq OMalley et al.(2016) OBP3_colamp_a	0.638	0.638
DOF1.6 M06831_2.00	Arabidopsis thaliana	HYACTTTWNNN	NNNWAAAGTRD	Dap-seq OMalley et al.(2016) AT1G47655_col_a	0.621	0.621
DOF1.6 M06832_2.00	Arabidopsis thaliana	YYYTTDNCTTTWYBN	NVRWAAAGNHAARRR	Dap-seq OMalley et al.(2016) AT1G47655_colamp_a	0.621	0.621
CDF5 M06837_2.00	Arabidopsis thaliana	HHWKYDCTTTTHHYTTTHYHYYWHNHH	DDNDWRRDRDAAARDDAAAAGHRMWDD	Dap-seq OMalley et al.(2016) AT1G69570_col_a	0.621	0.621
CDF5 M06838_2.00	Arabidopsis thaliana	YVCTTTTNNYTTWHHHBHBNN	NNVDVDDDWAARNNAAAAGBR	Dap-seq OMalley et al.(2016) AT1G69570_colamp_a	0.621	0.621
Dof2 M02674_2.00	Zea mays	NGCTTT	AAAGCN	SELEX Mathelier et al.(2014) MA0020.1	0.621	0.621
Dof3 M02676_2.00	Zea mays	BRCTTT	AAAGYV	SELEX Mathelier et al.(2014) MA0021.1	0.621	0.621
MNB1A M02677_2.00	Zea mays	DCTTT	AAAGH	SELEX Mathelier et al.(2014) MA0053.1	0.621	0.621
MNB1A M10440_2.00	Zea mays	NNDCTTTWNNN	NNNWAAAGHNN	Transfac Matys et al.(2006) P$DOF1_01	0.621	0.621
Dof2 M10436_2.00	Zea mays	NNDCTTTWNND	HNNWAAAGHNN	Transfac Matys et al.(2006) P$DOF2_01	0.621	0.621
Dof3 M10439_2.00	Zea mays	NBNCTTTNNBN	NVNNAAAGNVN	Transfac Matys et al.(2006) P$DOF3_01	0.621	0.621
Dof2 M10437_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$DOF_Q2	0.621	0.621
DOF1.5 M01938_2.00	Arabidopsis thaliana	ACKTTWWH	DWWAAMGT	PBM Weirauch et al.(2014) pTH7676	0.603	0.603
CDF2 M01946_2.00	Arabidopsis thaliana	NHVCTTTWHN	NDWAAAGBDN	PBM Weirauch et al.(2014) pTH7574	0.603	0.603
estExt_fgenesh1_pg.C_370003 M01954_2.00	Physcomitrella patens	NNNNHDNNNN	NNNNHDNNNN	PBM Weirauch et al.(2014) pTH8469	0.603	0.603
gw1.385.26.1 M01956_2.00	Physcomitrella patens	NNNCKTTWNN	NNWAAMGNNN	PBM Weirauch et al.(2014) pTH8458	0.603	0.603
PK16340.1 M01220_2.00	Cannabis sativa	CKTTWNN	NNWAAMG	PBM Lambert et al.(2019) pTH10129	0.603	0.603
PK23009.1 M01223_2.00	Cannabis sativa	NNHVCTTTWN	NWAAAGBDNN	PBM Lambert et al.(2019) pTH10279	0.603	0.603
DOF1.5 M06829_2.00	Arabidopsis thaliana	HWTDYMCTTTTTNHHHBHHNN	NNDDVDDDNAAAAAGKRHAWD	Dap-seq OMalley et al.(2016) COG1_col_a	0.603	0.603
DOF1.5 M06830_2.00	Arabidopsis thaliana	NHWWTDYACTTTTTN	NAAAAAGTRHAWWDN	Dap-seq OMalley et al.(2016) COG1_colamp_a	0.603	0.603
e_gw1.149.93.1 M01951_2.00	Physcomitrella patens	NCDTTNNN	NNNAAHGN	PBM Weirauch et al.(2014) pTH8463	0.586	0.586
CDF3 M01944_2.00	Arabidopsis thaliana	NHVCTTTWN	NWAAAGBDN	PBM Weirauch et al.(2014) pTH7659	0.569	0.569
e_gw1.392.16.1 M01953_2.00	Physcomitrella patens	NNCTTTWNN	NNWAAAGNN	PBM Weirauch et al.(2014) pTH8686	0.569	0.569
CDF3 M06849_2.00	Arabidopsis thaliana	HWTDYMCTTTTTNNHHHHW	WDDDDNNAAAAAGKRHAWD	Dap-seq OMalley et al.(2016) CDF3_col_a	0.569	0.569
CDF3 M06850_2.00	Arabidopsis thaliana	DDYRCTTTTHNNHYTTTN	NAAARDNNDAAAAGYRHH	Dap-seq OMalley et al.(2016) CDF3_colamp_a	0.569	0.569
fgenesh1_pg.C_Chr_08.0001000114 M01957_2.00	Ostreococcus tauri	NCKWWNNN	NNNWWMGN	PBM Weirauch et al.(2014) pTH9431	0.552	0.552
For this family, TFs with SR scores > 0.508* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Bostr.10689s0057.1.p	Dof	20	77	PPRVCPRCNSDNTKFCYYNNYSVSQPRYSCKNCRRYWTHGGALRNIPIGGSCRKVKRA

Links
Other Dof family TFs
Other *Boechera stricta* TFs

1950 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AMTR_s00186p00018500	Amborella trichopoda	AMTR_s00186p00018500	N
Aquca_014_00370	Aquilegia coerulea	Aquca_014_00370	N
SCL1	Arabidopsis lyrata	fgenesh2_kg.1__2335__AT1G21450.1	N
SCL1	Arabidopsis thaliana	AT1G21450	N
Bostr.25570s0024	Boechera stricta	Bostr.25570s0024	N
Bo7g059410	Brassica oleracea	Bo7g059410	N
Bo5g034360	Brassica oleracea	Bo5g034360	N
Bra017915	Brassica rapa	Bra017915	N
Bra012280	Brassica rapa	Bra012280	N
PK29476.1	Cannabis sativa	PK29476.1	N
Cagra.1632s0036	Capsella grandiflora	Cagra.1632s0036	N
Carubv10008658m.g	Capsella rubella	Carubv10008658m.g	N
evm.TU.supercontig_26.96	Carica papaya	evm.TU.supercontig_26.96	N
Ca_03920	Cicer arietinum	Ca_03920	N
Cla015267	Citrullus lanatus	Cla015267	N
Ciclev10000671m.g	Citrus clementina	Ciclev10000671m.g	N
orange1.1g007853m.g	Citrus sinensis	orange1.1g007853m.g	N
Cucsa.079150	Cucumis sativus	Cucsa.079150	N
Eucgr.F04276	Eucalyptus grandis	Eucgr.F04276	N
Thhalv10007142m.g	Eutrema salsugineum	Thhalv10007142m.g	N
gene01015-v1.0-hybrid	Fragaria vesca	gene01015-v1.0-hybrid	N
GLYMA14G27290	Glycine max	GLYMA14G27290	N
GLYMA06G12701	Glycine max	GLYMA06G12701	N
GLYMA13G09220	Glycine max	GLYMA13G09220	N
GLYMA04G42090	Glycine max	GLYMA04G42090	N
Gorai.005G083700	Gossypium raimondii	Gorai.005G083700	N
Gorai.009G251800	Gossypium raimondii	Gorai.009G251800	N
Lus10042776.g	Linum usitatissimum	Lus10042776.g	N
Lus10029747.g	Linum usitatissimum	Lus10029747.g	N
chr1.CM0982.460.nd	Lotus japonicus	chr1.CM0982.460.nd	N
MDP0000859087	Malus domestica	MDP0000859087	N
MDP0000727836	Malus domestica	MDP0000727836	N
cassava26784.m1	Manihot esculenta	cassava26784.m1	N
cassava42388.valid.m1	Manihot esculenta	cassava42388.valid.m1	N
MTR_1g029420	Medicago truncatula	MTR_1g029420	N
MTR_3g089055	Medicago truncatula	MTR_3g089055	N
mgf010500m	Mimulus guttatus	mgf010500m	N
GSMUA_Achr3G02410_001	Musa acuminata	GSMUA_Achr3G02410_001	N
GSMUA_Achr10G17290_001	Musa acuminata	GSMUA_Achr10G17290_001	N
OBART01G39420	Oryza barthii	OBART01G39420	N
OB01G48180	Oryza brachyantha	OB01G48180	N
ORGLA01G0333300	Oryza glaberrima	ORGLA01G0333300	N
OGLUM01G43650	Oryza glumaepatula	OGLUM01G43650	N
OLONG_003002	Oryza longistaminata	OLONG_003002	N
OMERI01G36330	Oryza meridionalis	OMERI01G36330	N
ONIVA01G44280	Oryza nivara	ONIVA01G44280	N
OPUNC01G38160	Oryza punctata	OPUNC01G38160	N
ORUFI01G42800	Oryza rufipogon	ORUFI01G42800	N
OS01G0881500	Oryza sativa	OS01G0881500	N
PDK_20s1392371g003	Phoenix dactylifera	PDK_20s1392371g003	N
POPTR_0005s20890	Populus trichocarpa	POPTR_0005s20890	N
POPTR_0002s07430	Populus trichocarpa	POPTR_0002s07430	N
Pm022704	Prunus mume	Pm022704	N
29648.m001919	Ricinus communis	29648.m001919	N
SapurV1A.0261s0120	Salix purpurea	SapurV1A.0261s0120	N
SapurV1A.0267s0240	Salix purpurea	SapurV1A.0267s0240	N
Solyc04g064550.1	Solanum lycopersicum	Solyc04g064550.1	N
PGSC0003DMG400024853	Solanum tuberosum	PGSC0003DMG400024853	N
TCM_035362	Theobroma cacao	TCM_035362	N
SCL1	Vitis vinifera	VIT_18s0001g15270	N
VIT_04s0044g01370	Vitis vinifera	VIT_04s0044g01370	N

Bostr.10689s0057 (Boechera stricta) Dof

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1950 Related TFs

Bostr.10689s0057 **(Boechera stricta)
Dof**