Bostr.0597s0142 (Boechera stricta)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 Bostr.0597s0142 T181231_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FAR1
M06880_2.00 		Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN		 Dap-seq
OMalley et al.(2016)
FAR1_col_a 		0.922 0.922
FAR1
M06881_2.00 		Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN		 Dap-seq
OMalley et al.(2016)
FAR1_colamp_a 		0.922 0.922
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.0597s0142.1.p FAR1 65 154

Links

Other FAR1 family TFs
Other Boechera stricta TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK03816.1 Cannabis sativa PK03816.1 N
evm.TU.supercontig_181.13 Carica papaya evm.TU.supercontig_181.13 N
Cla015679 Citrullus lanatus Cla015679 N
Ciclev10025757m.g Citrus clementina Ciclev10025757m.g N
orange1.1g048259m.g Citrus sinensis orange1.1g048259m.g N
Cucsa.358990 Cucumis sativus Cucsa.358990 N
Eucgr.J02994 Eucalyptus grandis Eucgr.J02994 N
gene05956-v1.0-hybrid Fragaria vesca gene05956-v1.0-hybrid N
GLYMA13G43651 Glycine max GLYMA13G43651 N
Gorai.010G228000 Gossypium raimondii Gorai.010G228000 N
Gorai.006G098600 Gossypium raimondii Gorai.006G098600 N
MDP0000500940 Malus domestica MDP0000500940 N
MDP0000276691 Malus domestica MDP0000276691 N
cassava1476.valid.m1 Manihot esculenta cassava1476.valid.m1 N
MTR_2g102227 Medicago truncatula MTR_2g102227 N
mgf024433m Mimulus guttatus mgf024433m N
POPTR_0001s18000 Populus trichocarpa POPTR_0001s18000 N
Pm027397 Prunus mume Pm027397 N
Pm013502 Prunus mume Pm013502 N
PRUPE_ppa009556mg Prunus persica PRUPE_ppa009556mg N
29872.m000548 Ricinus communis 29872.m000548 N
SapurV1A.0002s0250 Salix purpurea SapurV1A.0002s0250 N
SapurV1A.1168s0060 Salix purpurea SapurV1A.1168s0060 N
SapurV1A.3798s0010 Salix purpurea SapurV1A.3798s0010 N
Solyc12g043090.1 Solanum lycopersicum Solyc12g043090.1 N
PGSC0003DMG400031382 Solanum tuberosum PGSC0003DMG400031382 N
TCM_028688 Theobroma cacao TCM_028688 N
VIT_09s0002g04700 Vitis vinifera VIT_09s0002g04700 N