CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

SMU15012242 *(Schmidtea mediterranea)* Forkhead
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00250 (Forkhead)	IPR001766	SMU15012242	T189611_2.00	Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
slp2 M03738_2.00	Drosophila melanogaster	NNTRTTTACAACAHN	NDTGTTGTAAAYANN	SELEX Nitta et al.(2015) slp2_1	0.817	0.826
slp2 M06196_2.00	Drosophila melanogaster	RTAAACAV	BTGTTTAY	B1H Zhu et al.(2011) slp2_SANGER_5_FBgn0004567	0.817	0.826
FOXG1 M01978_2.00	Homo sapiens	RTAAACAH	DTGTTTAY	PBM Weirauch et al.(2014) pTH5501	0.814	0.849
Foxg1 M00791_2.00	Mus musculus	NNNNMHAYAN	NTRTDKNNNN	PBM Weirauch et al.(2013) pTH2846	0.814	0.849
FOXG1 M03032_2.00	Homo sapiens	RTAAACAATDGTAAACA	TGTTTACHATTGTTTAY	SELEX Jolma et al.(2013) FOXG1_1	0.814	0.849
FOXG1 M03033_2.00	Homo sapiens	RCGGACACAATR	YATTGTGTCCGY	SELEX Jolma et al.(2013) FOXG1_2	0.814	0.849
Foxg1 M03052_2.00	Mus musculus	ATAAACAAVTGTMAACA	TGTTKACABTTGTTTAT	SELEX Jolma et al.(2013) Foxg1_1	0.814	0.849
Foxg1 M03053_2.00	Mus musculus	MHGGACACAATC	GATTGTGTCCDK	SELEX Jolma et al.(2013) Foxg1_2	0.814	0.849
Foxg1 M03054_2.00	Mus musculus	GTAAACA	TGTTTAC	SELEX Jolma et al.(2013) Foxg1_3	0.814	0.849
FOXG1 M04839_2.00	Homo sapiens	NACRYMMACAH	DTGTKKRYGTN	SELEX Yin et al.(2017) FOXG1_eDBD_HT-SELEX	0.814	0.849
FOXG1 M04840_2.00	Homo sapiens	HRCGYMAACAH	DTGTTKRCGYD	SELEX Yin et al.(2017) FOXG1_eDBD_Methyl-HT-SELEX	0.814	0.849
foxg1a M01985_2.00	Oryzias latipes	RTAAACAH	DTGTTTAY	PBM Weirauch et al.(2014) pTH6729	0.809	0.814
slp1 M01986_2.00	Drosophila melanogaster	NRTAAACANN	NNTGTTTAYN	PBM Weirauch et al.(2014) pTH6549	0.807	0.721
slp1 M03736_2.00	Drosophila melanogaster	WDYRTAAACAWW	WWTGTTTAYRHW	SELEX Nitta et al.(2015) slp1_1	0.807	0.721
slp1 M03737_2.00	Drosophila melanogaster	RTRTAAACAAAYADH	DHTRTTTGTTTAYAY	SELEX Nitta et al.(2015) slp1_2	0.807	0.721
slp1 M06474_2.00	Drosophila melanogaster	WRBVWAAACAH	DTGTTTWBVYW	B1H Mathelier et al.(2014) MA0458.1	0.807	0.721
slp1 M06195_2.00	Drosophila melanogaster	WRBVWAAACAH	DTGTTTWBVYW	B1H Zhu et al.(2011) slp1_NAR_FBgn0003430	0.807	0.721
slp1 M09669_2.00	Drosophila melanogaster	ATGTMAACAMAVV	BBTKTGTTKACAT	Misc Kulakovskiy et al.(2009) slp1	0.807	0.721
CBG14280 M01974_2.00	Caenorhabditis briggsae	RTAAACAN	NTGTTTAY	PBM Weirauch et al.(2014) pTH6734	0.796	0.756
FOXI1 M03026_2.00	Homo sapiens	GTAAACA	TGTTTAC	SELEX Jolma et al.(2013) FOXI1_1	0.711	0.628
FOXI1 M03027_2.00	Homo sapiens	RTGTKTACGGTAAACAA	TTGTTTACCGTAMACAY	SELEX Jolma et al.(2013) FOXI1_2	0.711	0.628
FOXI1 M04827_2.00	Homo sapiens	NNNNNRTMAACAN	NTGTTKAYNNNNN	SELEX Yin et al.(2017) FOXI1_eDBD_HT-SELEX	0.711	0.628
FOXI1 M04829_2.00	Homo sapiens	AAYGTAAACAMW	WKTGTTTACRTT	SELEX Yin et al.(2017) FOXI1_FL_HT-SELEX	0.711	0.628
FOXI1 M09095_2.00	Homo sapiens	RRCCAATCAVAD	HTBTGATTGGYY	Misc Kulakovskiy et al.(2013) FOXI1_HUMAN.H11MO.0.B	0.711	0.628
FOXI1 M10556_2.00	Homo sapiens	HAWAYAAAYAHVH	DBDTRTTTRTWTD	Transfac Matys et al.(2006) V$HFH3_01	0.711	0.628
FOXI1 M04828_2.00	Homo sapiens	NWWVHRTAAACAH	DTGTTTAYDBWWN	SELEX Yin et al.(2017) FOXI1_eDBD_Methyl-HT-SELEX	0.711	0.628
FOXI1 M04830_2.00	Homo sapiens	AAYRTAAACAAW	WTTGTTTAYRTT	SELEX Yin et al.(2017) FOXI1_FL_Methyl-HT-SELEX	0.711	0.628
Foxi1 M09109_2.00	Mus musculus	RRCCAATCAVAD	HTBTGATTGGYY	Misc Kulakovskiy et al.(2013) FOXI1_MOUSE.H11MO.0.B	0.711	0.616
FOXE1 M04845_2.00	Homo sapiens	BVYTAWRYAAACADN	NHTGTTTRYWTARBV	SELEX Yin et al.(2017) FOXE1_eDBD_HT-SELEX	0.682	0.593
FOXE1 M04846_2.00	Homo sapiens	BVYTAARYAAACAWH	DWTGTTTRYTTARBV	SELEX Yin et al.(2017) FOXE1_eDBD_Methyl-HT-SELEX	0.682	0.593
Foxl1 M00164_2.00	Mus musculus	NNNRTMAAYA	TRTTKAYNNN	PBM Badis et al.(2009) Foxl1_2809	0.681	0.640
FOXL1 M03034_2.00	Homo sapiens	RTAAACA	TGTTTAY	SELEX Jolma et al.(2013) FOXL1_1	0.681	0.640
FOXL1 M03035_2.00	Homo sapiens	NRTAAAYAAAYAN	NTRTTTRTTTAYN	SELEX Jolma et al.(2013) FOXL1_2	0.681	0.640
FOXL1 M10558_2.00	Homo sapiens	DHNVHATAAAYAHNNN	NNNDTRTTTATDBNDH	Transfac Matys et al.(2006) V$FREAC7_01	0.681	0.640
FOXD3 M03044_2.00	Homo sapiens	NRTMAAYRTTWDYN	NRHWAAYRTTKAYN	SELEX Jolma et al.(2013) FOXD3_1	0.679	0.628
FOXD3 M03045_2.00	Homo sapiens	RTAAAYA	TRTTTAY	SELEX Jolma et al.(2013) FOXD3_2	0.679	0.628
FOXD3 M04855_2.00	Homo sapiens	VHWRHRTAMACW	WGTKTAYDYWDB	SELEX Yin et al.(2017) FOXD3_eDBD_HT-SELEX	0.679	0.628
Foxd3 M09114_2.00	Mus musculus	DVNWRDRNAAACAVN	NBTGTTTNYHYWNBH	Misc Kulakovskiy et al.(2013) FOXD3_MOUSE.H11MO.0.C	0.679	0.628
FOXD3 M10565_2.00	Homo sapiens	RADHAAAYAWWH	DWWTRTTTDHTY	Transfac Matys et al.(2006) V$FOXD3_01	0.679	0.628
FOXD3 M10566_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HFH2_Q5	0.679	0.628
FOXD3 M04856_2.00	Homo sapiens	VYWRHRTAAACW	WGTTTAYDYWRB	SELEX Yin et al.(2017) FOXD3_eDBD_Methyl-HT-SELEX	0.679	0.628
fd64A M06197_2.00	Drosophila melanogaster	KVWAAACA	TGTTTWBM	B1H Zhu et al.(2011) fd64A_SANGER_5_FBgn0004895	0.672	0.640
Foxc2 M00796_2.00	Mus musculus	HNNRHMAAYA	TRTTKDYNND	PBM Weirauch et al.(2013) pTH3796	0.671	0.640
FOXC2 M03036_2.00	Homo sapiens	NRTMAATATTDWYN	NRWHAATATTKAYN	SELEX Jolma et al.(2013) FOXC2_1	0.671	0.640
FOXC2 M03037_2.00	Homo sapiens	RTAAAYAAACA	TGTTTRTTTAY	SELEX Jolma et al.(2013) FOXC2_2	0.671	0.640
FOXC2 M03038_2.00	Homo sapiens	WAHRTMAAYAWW	WWTRTTKAYDTW	SELEX Jolma et al.(2013) FOXC2_3	0.671	0.640
FOXC2 M04841_2.00	Homo sapiens	NHVNRYMAACAH	DTGTTKRYNBDN	SELEX Yin et al.(2017) FOXC2_eDBD_HT-SELEX_1	0.671	0.640
FOXC2 M04842_2.00	Homo sapiens	RHAMAYAAACAH	DTGTTTRTKTDY	SELEX Yin et al.(2017) FOXC2_eDBD_HT-SELEX_2	0.671	0.640
FOXC2 M10559_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FKHL14_Q2	0.671	0.640
FOXC2 M04843_2.00	Homo sapiens	NHNNRYMAACAN	NTGTTKRYNNDN	SELEX Yin et al.(2017) FOXC2_eDBD_Methyl-HT-SELEX_1	0.671	0.640
FOXC2 M04844_2.00	Homo sapiens	VHMMAYAAACAN	NTGTTTRTKKDB	SELEX Yin et al.(2017) FOXC2_eDBD_Methyl-HT-SELEX_2	0.671	0.640
foxe3 M01228_2.00	Xenopus tropicalis	WNNVHHMAYW	WRTKDDBNNW	PBM Lambert et al.(2019) pTH9824	0.667	0.628
For this family, TFs with SR scores > 0.664* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
SMU15012242	Forkhead	51	138	KPPFSYNALIMMAIRNSDQKRLTLNGIYEFIMRNFPYYKNNKQGWQNSIRHNLSLNKCFIKVPRGYDDPGKGNYWMVDPACEDVYIGG

Links
Other Forkhead family TFs
Other *Schmidtea mediterranea* TFs

707 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AMTR_s00079p00088960	Amborella trichopoda	AMTR_s00079p00088960	N	0.000
Aquca_026_00293	Aquilegia coerulea	Aquca_026_00293	N	0.000
BRADI4G16740	Brachypodium distachyon	BRADI4G16740	N	0.000
BRADI4G16750	Brachypodium distachyon	BRADI4G16750	N	0.000
PK04625.1	Cannabis sativa	PK04625.1	N	0.000
PK03169.1	Cannabis sativa	PK03169.1	N	0.000
evm.TU.supercontig_3.514	Carica papaya	evm.TU.supercontig_3.514	N	0.000
Cla007208	Citrullus lanatus	Cla007208	N	0.000
Ciclev10013705m.g	Citrus clementina	Ciclev10013705m.g	N	0.000
orange1.1g022591m.g	Citrus sinensis	orange1.1g022591m.g	N	0.000
Cucsa.031350	Cucumis sativus	Cucsa.031350	N	0.000
Eucgr.J01501	Eucalyptus grandis	Eucgr.J01501	N	0.000
Thhalv10019048m.g	Eutrema salsugineum	Thhalv10019048m.g	N	0.000
GLYMA08G31143	Glycine max	GLYMA08G31143	N	0.000
GLYMA20G24950	Glycine max	GLYMA20G24950	N	0.000
LPERR01G15290	Leersia perrieri	LPERR01G15290	N	0.000
cassava6185.valid.m1	Manihot esculenta	cassava6185.valid.m1	N	0.000
MTR_1g110840	Medicago truncatula	MTR_1g110840	N	0.000
MTR_6g054080	Medicago truncatula	MTR_6g054080	N	0.000
MTR_6g054150	Medicago truncatula	MTR_6g054150	N	0.000
MTR_6g453130	Medicago truncatula	MTR_6g453130	N	0.000
MTR_7g007010	Medicago truncatula	MTR_7g007010	N	0.000
GSMUA_Achr3G29520_001	Musa acuminata	GSMUA_Achr3G29520_001	N	0.000
GSMUA_Achr9G21360_001	Musa acuminata	GSMUA_Achr9G21360_001	N	0.000
GSMUA_Achr4G13790_001	Musa acuminata	GSMUA_Achr4G13790_001	N	0.000
GSMUA_Achr4G06820_001	Musa acuminata	GSMUA_Achr4G06820_001	N	0.000
OBART01G17510	Oryza barthii	OBART01G17510	N	0.000
OGLUM01G20320	Oryza glumaepatula	OGLUM01G20320	N	0.000
BGIOSGA001546	Oryza indica	BGIOSGA001546	N	0.000
OMERI01G16320	Oryza meridionalis	OMERI01G16320	N	0.000
ONIVA01G19320	Oryza nivara	ONIVA01G19320	N	0.000
OPUNC01G18000	Oryza punctata	OPUNC01G18000	N	0.000
ORUFI01G19440	Oryza rufipogon	ORUFI01G19440	N	0.000
OS01G0511000	Oryza sativa	OS01G0511000	N	0.000
Pavir.J01483	Panicum virgatum	Pavir.J01483	N	0.000
Pavir.Eb02390	Panicum virgatum	Pavir.Eb02390	N	0.000
Pavir.Ea01295	Panicum virgatum	Pavir.Ea01295	N	0.000
POPTR_0004s09920	Populus trichocarpa	POPTR_0004s09920	N	0.000
Si022660m.g	Setaria italica	Si022660m.g	N	0.000
Si004887m.g	Setaria italica	Si004887m.g	N	0.000
Sb01g032580	Sorghum bicolor	Sb01g032580	N	0.000
Sb09g030780	Sorghum bicolor	Sb09g030780	N	0.000
TCM_019459	Theobroma cacao	TCM_019459	N	0.000
TRAES3BF008600030CFD_g	Triticum aestivum	TRAES3BF008600030CFD_g	N	0.000
TRAES3BF008500030CFD_g	Triticum aestivum	TRAES3BF008500030CFD_g	N	0.000
GRMZM2G386674	Zea mays	GRMZM2G386674	N	0.000
GRMZM2G073044	Zea mays	GRMZM2G073044	N	0.000
GRMZM2G060544	Zea mays	GRMZM2G060544	N	0.000

SMU15012242 (Schmidtea mediterranea) Forkhead

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

707 Related TFs

SMU15012242 **(Schmidtea mediterranea)
Forkhead**