Bo1g055120 (Brassica oleracea)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 Bo1g055120 T191872_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA16
M06897_2.00 		Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT		 Dap-seq
OMalley et al.(2016)
GATA16_col_a 		0.823 0.806
GATA15
M01997_2.00 		Arabidopsis thaliana
NNHGATCNN
NNGATCDNN		 PBM
Weirauch et al.(2014)
pTH7662 		0.803 0.806
GATA15
M06886_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATS
SATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
GATA15_col_b 		0.803 0.806
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo1g055120.1 GATA 40 75

Links

Other GATA family TFs
Other Brassica oleracea TFs

112 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_10373 Aegilops tauschii F775_10373 I
F775_13778 Aegilops tauschii F775_13778 N
F775_17181 Aegilops tauschii F775_17181 I
AMTR_s00009p00107000 Amborella trichopoda AMTR_s00009p00107000 I
AMTR_s00012p00239180 Amborella trichopoda AMTR_s00012p00239180 I
Aquca_003_00096 Aquilegia coerulea Aquca_003_00096 I
Aquca_009_00956 Aquilegia coerulea Aquca_009_00956 I
TRFL2 Arabidopsis lyrata Al_scaffold_0001_698 I
TRFL4 Arabidopsis lyrata Al_scaffold_0005_2280 I
TRFL9 Arabidopsis lyrata fgenesh2_kg.3__1313__AT3G12560.1 I
TRFL1 Arabidopsis lyrata fgenesh2_kg.5__1021__AT3G46590.3 I
TBP1 Arabidopsis lyrata fgenesh2_kg.6__1339__AT5G13820.1 I
ATTRP1 Arabidopsis lyrata fgenesh2_kg.8__1886__AT5G59430.4 I
TRP5 Arabidopsis thaliana AT1G07540 D
TRP3 Arabidopsis thaliana AT3G12560 I
TRP2 Arabidopsis thaliana AT3G46590 D
TRFL4 Arabidopsis thaliana AT3G53790 I
TRP4 Arabidopsis thaliana AT5G13820 I
TRP1 Arabidopsis thaliana AT5G59430 D
Bostr.18473s0300 Boechera stricta Bostr.18473s0300 I
Bostr.25219s0206 Boechera stricta Bostr.25219s0206 I
Bostr.26833s0301 Boechera stricta Bostr.26833s0301 I
Bostr.2902s0116 Boechera stricta Bostr.2902s0116 I
Bostr.3640s0028 Boechera stricta Bostr.3640s0028 I
BRADI1G66677 Brachypodium distachyon BRADI1G66677 I
BRADI2G62170 Brachypodium distachyon BRADI2G62170 I
Bo01118s020 Brassica oleracea Bo01118s020 I
Bo1g139150 Brassica oleracea Bo1g139150 I
Bo2g011570 Brassica oleracea Bo2g011570 I
Bo3g009370 Brassica oleracea Bo3g009370 I
Bo4g120560 Brassica oleracea Bo4g120560 I
Bo5g008270 Brassica oleracea Bo5g008270 I
Bo5g133380 Brassica oleracea Bo5g133380 I
Bo9g139390 Brassica oleracea Bo9g139390 I
Bo9g166400 Brassica oleracea Bo9g166400 I
Bra002566 Brassica rapa Bra002566 I
Bra006218 Brassica rapa Bra006218 I
Bra008800 Brassica rapa Bra008800 I
Bra015585 Brassica rapa Bra015585 I
Bra023437 Brassica rapa Bra023437 I
Bra030689 Brassica rapa Bra030689 I
Bra034751 Brassica rapa Bra034751 I
Bra038729 Brassica rapa Bra038729 I
PK21687.1 Cannabis sativa PK21687.1 D
Cagra.0448s0008 Capsella grandiflora Cagra.0448s0008 I
Cagra.1317s0071 Capsella grandiflora Cagra.1317s0071 I
Cagra.1671s0374 Capsella grandiflora Cagra.1671s0374 I
Cagra.5588s0009 Capsella grandiflora Cagra.5588s0009 I
Cagra.5641s0019 Capsella grandiflora Cagra.5641s0019 I
Carubv10000426m.g Capsella rubella Carubv10000426m.g I
Carubv10011259m.g Capsella rubella Carubv10011259m.g I
Carubv10013179m.g Capsella rubella Carubv10013179m.g I
Carubv10016934m.g Capsella rubella Carubv10016934m.g I
Carubv10018629m.g Capsella rubella Carubv10018629m.g I
Carubv10026172m.g Capsella rubella Carubv10026172m.g I
evm.TU.supercontig_1.421 Carica papaya evm.TU.supercontig_1.421 I
evm.TU.supercontig_81.127 Carica papaya evm.TU.supercontig_81.127 I
Ca_02624 Cicer arietinum Ca_02624 I
Ca_13309 Cicer arietinum Ca_13309 I
Ca_16107 Cicer arietinum Ca_16107 I
Ca_21136 Cicer arietinum Ca_21136 I
Cla004068 Citrullus lanatus Cla004068 I
Cla008361 Citrullus lanatus Cla008361 I
Cla013524 Citrullus lanatus Cla013524 I
Ciclev10027927m.g Citrus clementina Ciclev10027927m.g I
Ciclev10030878m.g Citrus clementina Ciclev10030878m.g I
orange1.1g042386m.g Citrus sinensis orange1.1g042386m.g I
Cucsa.117790 Cucumis sativus Cucsa.117790 I
Cucsa.138770 Cucumis sativus Cucsa.138770 I
Cucsa.165230 Cucumis sativus Cucsa.165230 I
Eucgr.B02351 Eucalyptus grandis Eucgr.B02351 I
Eucgr.J01245 Eucalyptus grandis Eucgr.J01245 I
Thhalv10002472m.g Eutrema salsugineum Thhalv10002472m.g I
Thhalv10007062m.g Eutrema salsugineum Thhalv10007062m.g I
Thhalv10011058m.g Eutrema salsugineum Thhalv10011058m.g I
Thhalv10012893m.g Eutrema salsugineum Thhalv10012893m.g I
Thhalv10013086m.g Eutrema salsugineum Thhalv10013086m.g I
Thhalv10020283m.g Eutrema salsugineum Thhalv10020283m.g I
gene02230-v1.0-hybrid Fragaria vesca gene02230-v1.0-hybrid I
gene18432-v1.0-hybrid Fragaria vesca gene18432-v1.0-hybrid I
gene26492-v1.0-hybrid Fragaria vesca gene26492-v1.0-hybrid I
GLYMA07G15940 Glycine max GLYMA07G15940 I
GLYMA11G14760 Glycine max GLYMA11G14760 I
GLYMA11G34050 Glycine max GLYMA11G34050 I
GLYMA12G06680 Glycine max GLYMA12G06680 I
GLYMA13G41210 Glycine max GLYMA13G41210 I
GLYMA15G04200 Glycine max GLYMA15G04200 I
GLYMA18G04251 Glycine max GLYMA18G04251 I
GLYMA18G39911 Glycine max GLYMA18G39911 I
Gorai.003G130700 Gossypium raimondii Gorai.003G130700 I
Gorai.006G172000 Gossypium raimondii Gorai.006G172000 I
Gorai.009G098300 Gossypium raimondii Gorai.009G098300 I
Gorai.010G200900 Gossypium raimondii Gorai.010G200900 I
Gorai.011G266100 Gossypium raimondii Gorai.011G266100 I
Gorai.013G021300 Gossypium raimondii Gorai.013G021300 I
MLOC_53202 Hordeum vulgare MLOC_53202 N
MLOC_57410 Hordeum vulgare MLOC_57410 I
MLOC_59817 Hordeum vulgare MLOC_59817 I
LPERR02G30830 Leersia perrieri LPERR02G30830 I
LPERR03G10840 Leersia perrieri LPERR03G10840 I
Lus10000947.g Linum usitatissimum Lus10000947.g I
Lus10002704.g Linum usitatissimum Lus10002704.g I
Lus10010844.g Linum usitatissimum Lus10010844.g I
Lus10024385.g Linum usitatissimum Lus10024385.g I
Lus10040285.g Linum usitatissimum Lus10040285.g I
LjSGA_017694.1 Lotus japonicus LjSGA_017694.1 I
LjSGA_019393.1 Lotus japonicus LjSGA_019393.1 I
MDP0000119184 Malus domestica MDP0000119184 I
MDP0000137531 Malus domestica MDP0000137531 I
MDP0000209974 Malus domestica MDP0000209974 I
cassava19451.valid.m1 Manihot esculenta cassava19451.valid.m1 I
cassava19452.valid.m1 Manihot esculenta cassava19452.valid.m1 I
cassava19453.valid.m1 Manihot esculenta cassava19453.valid.m1 I
cassava30955.valid.m1 Manihot esculenta cassava30955.valid.m1 I
cassava31336.valid.m1 Manihot esculenta cassava31336.valid.m1 I
MTR_2g097290 Medicago truncatula MTR_2g097290 I
MTR_3g067935 Medicago truncatula MTR_3g067935 I
MTR_5g080010 Medicago truncatula MTR_5g080010 I
MTR_7g061840 Medicago truncatula MTR_7g061840 I
mgf005791m Mimulus guttatus mgf005791m I
mgf007893m Mimulus guttatus mgf007893m I
GSMUA_Achr10G22620_001 Musa acuminata GSMUA_Achr10G22620_001 I
GSMUA_Achr7G15090_001 Musa acuminata GSMUA_Achr7G15090_001 I
GSMUA_Achr8G20810_001 Musa acuminata GSMUA_Achr8G20810_001 I
GSMUA_Achr9G03910_001 Musa acuminata GSMUA_Achr9G03910_001 I
OBART02G37370 Oryza barthii OBART02G37370 I
OBART03G12240 Oryza barthii OBART03G12240 I
OB02G44060 Oryza brachyantha OB02G44060 I
OB03G22340 Oryza brachyantha OB03G22340 I
ORGLA02G0325900 Oryza glaberrima ORGLA02G0325900 I
ORGLA03G0118300 Oryza glaberrima ORGLA03G0118300 I
OGLUM02G38510 Oryza glumaepatula OGLUM02G38510 I
OGLUM03G12230 Oryza glumaepatula OGLUM03G12230 I
BGIOSGA005358 Oryza indica BGIOSGA005358 I
BGIOSGA012326 Oryza indica BGIOSGA012326 I
OLONG_013725 Oryza longistaminata OLONG_013725 I
OLONG_025333 Oryza longistaminata OLONG_025333 I
OMERI01G33350 Oryza meridionalis OMERI01G33350 I
OMERI03G11490 Oryza meridionalis OMERI03G11490 I
ONIVA02G40130 Oryza nivara ONIVA02G40130 I
ONIVA11G13450 Oryza nivara ONIVA11G13450 I
OPUNC02G34540 Oryza punctata OPUNC02G34540 I
OPUNC03G11810 Oryza punctata OPUNC03G11810 I
ORUFI02G38880 Oryza rufipogon ORUFI02G38880 I
ORUFI03G12870 Oryza rufipogon ORUFI03G12870 I
OS03G0274300 Oryza sativa OS03G0274300 I
Pavir.Ea04142 Panicum virgatum Pavir.Ea04142 I
Pavir.Gb01315 Panicum virgatum Pavir.Gb01315 I
Pavir.Ia03771 Panicum virgatum Pavir.Ia03771 I
Pavir.J14051 Panicum virgatum Pavir.J14051 I
Pavir.J18132 Panicum virgatum Pavir.J18132 I
e_gw1.132.51.1 Physcomitrella patens e_gw1.132.51.1 I
gw1.98.100.1 Physcomitrella patens gw1.98.100.1 I
POPTR_0001s24840 Populus trichocarpa POPTR_0001s24840 I
POPTR_0006s08680 Populus trichocarpa POPTR_0006s08680 I
POPTR_0008s05740 Populus trichocarpa POPTR_0008s05740 I
POPTR_0009s03730 Populus trichocarpa POPTR_0009s03730 I
POPTR_0010s20990 Populus trichocarpa POPTR_0010s20990 I
Pm000720 Prunus mume Pm000720 I
Pm002686 Prunus mume Pm002686 I
Pm018821 Prunus mume Pm018821 I
PRUPE_ppa002374mg Prunus persica PRUPE_ppa002374mg I
PRUPE_ppa002403mg Prunus persica PRUPE_ppa002403mg I
PRUPE_ppa002522mg Prunus persica PRUPE_ppa002522mg I
28880.m000016 Ricinus communis 28880.m000016 I
SapurV1A.0040s0420 Salix purpurea SapurV1A.0040s0420 I
SapurV1A.0041s0150 Salix purpurea SapurV1A.0041s0150 I
SapurV1A.0281s0030 Salix purpurea SapurV1A.0281s0030 I
SapurV1A.0451s0070 Salix purpurea SapurV1A.0451s0070 I
SELMODRAFT_121021 Selaginella moellendorffii SELMODRAFT_121021 I
SELMODRAFT_123062 Selaginella moellendorffii SELMODRAFT_123062 I
SELMODRAFT_131544 Selaginella moellendorffii SELMODRAFT_131544 I
Si000591m.g Setaria italica Si000591m.g I
Si009551m.g Setaria italica Si009551m.g I
Si016548m.g Setaria italica Si016548m.g I
Si034524m.g Setaria italica Si034524m.g I
Solyc04g011650.2 Solanum lycopersicum Solyc04g011650.2 I
Solyc05g054410.2 Solanum lycopersicum Solyc05g054410.2 I
Solyc06g005590.2 Solanum lycopersicum Solyc06g005590.2 I
Solyc06g076270.2 Solanum lycopersicum Solyc06g076270.2 I
PGSC0003DMG400002138 Solanum tuberosum PGSC0003DMG400002138 I
PGSC0003DMG400006353 Solanum tuberosum PGSC0003DMG400006353 I
PGSC0003DMG400023432 Solanum tuberosum PGSC0003DMG400023432 I
PGSC0003DMG400030324 Solanum tuberosum PGSC0003DMG400030324 I
Sb01g039650 Sorghum bicolor Sb01g039650 I
Sb06g019970 Sorghum bicolor Sb06g019970 I
TCM_021921 Theobroma cacao TCM_021921 I
TCM_041816 Theobroma cacao TCM_041816 I
TCM_042704 Theobroma cacao TCM_042704 I
TRAES3BF045500220CFD_g Triticum aestivum TRAES3BF045500220CFD_g I
Traes_4AS_FA7E65184 Triticum aestivum Traes_4AS_FA7E65184 I
Traes_4BL_AB2636FB0 Triticum aestivum Traes_4BL_AB2636FB0 I
Traes_4DL_3849A9A5F Triticum aestivum Traes_4DL_3849A9A5F I
Traes_6AL_E94233A40 Triticum aestivum Traes_6AL_E94233A40 N
Traes_6DL_5D47DC487 Triticum aestivum Traes_6DL_5D47DC487 N
TRIUR3_01942 Triticum urartu TRIUR3_01942 N
TRIUR3_18647 Triticum urartu TRIUR3_18647 I
VIT_06s0004g04940 Vitis vinifera VIT_06s0004g04940 I
TRFL4 Vitis vinifera VIT_08s0007g00500 I
VIT_13s0019g01670 Vitis vinifera VIT_13s0019g01670 I
GRMZM2G063151 Zea mays GRMZM2G063151 I
GRMZM2G110309 Zea mays GRMZM2G110309 I
GRMZM2G133016 Zea mays GRMZM2G133016 I