Ciclev10019614m.g (Citrus clementina)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Ciclev10019614m.g T196488_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA26
M02001_2.00 		Arabidopsis thaliana
NNKATBNNNN
NNNNVATMNN		 PBM
Weirauch et al.(2014)
pTH7490 		0.867 0.972
GATA27
M02005_2.00 		Arabidopsis thaliana
NNGATBNNN
NNNVATCNN		 PBM
Weirauch et al.(2014)
pTH7492 		0.867 0.972
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10019607m GATA 7 42
Ciclev10019614m GATA 7 42

Links

Other GATA family TFs
Other Citrus clementina TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK01612.1 Cannabis sativa PK01612.1 N 0.000
Ca_16293 Cicer arietinum Ca_16293 N 0.000
Eucgr.B02328 Eucalyptus grandis Eucgr.B02328 N 0.000
GLYMA12G06630 Glycine max GLYMA12G06630 N 0.000
GLYMA11G14670 Glycine max GLYMA11G14670 N 0.000
chr3.CM0792.420.nd Lotus japonicus chr3.CM0792.420.nd N 0.000
MDP0000194661 Malus domestica MDP0000194661 N 0.000
cassava34368.m1 Manihot esculenta cassava34368.m1 N 0.000
cassava34369.m1 Manihot esculenta cassava34369.m1 N 0.000
MTR_4g064200 Medicago truncatula MTR_4g064200 N 0.000
POPTR_0009s03850 Populus trichocarpa POPTR_0009s03850 N 0.000
POPTR_0001s24890 Populus trichocarpa POPTR_0001s24890 N 0.000
PRUPE_ppa021807mg Prunus persica PRUPE_ppa021807mg N 0.000
PRUPE_ppa002166mg Prunus persica PRUPE_ppa002166mg N 0.000
28650.m000186 Ricinus communis 28650.m000186 N 0.000
28650.m000187 Ricinus communis 28650.m000187 N 0.000
SapurV1A.0040s0520 Salix purpurea SapurV1A.0040s0520 N 0.000
SapurV1A.0041s0200 Salix purpurea SapurV1A.0041s0200 N 0.000
TCM_041810 Theobroma cacao TCM_041810 N 0.000