Ciclev10027306m.g (Citrus clementina)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Ciclev10027306m.g T196495_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA24
M01941_2.00 		Arabidopsis thaliana
HGATBNN
NNVATCD		 PBM
Weirauch et al.(2014)
pTH7661 		0.851 0.944
GATA28
M01996_2.00 		Arabidopsis thaliana
NNGATNN
NNATCNN		 PBM
Weirauch et al.(2014)
pTH7505 		0.851 0.889
GATA28
M06883_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATG
CATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
ZML2_col_a 		0.851 0.889
OS06G0698900
M02015_2.00 		Oryza sativa
NNNNAHBNN
NNVDTNNNN		 PBM
Weirauch et al.(2014)
pTH8641 		0.851 0.861
ZIM
M06892_2.00 		Arabidopsis thaliana
AWYSRACGGYYVWGA
TCWBRRCCGTYSRWT		 Dap-seq
OMalley et al.(2016)
ZIM_col_a 		0.815 0.861
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10027306m GATA 215 252

Links

Other GATA family TFs
Other Citrus clementina TFs

114 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_25077 Aegilops tauschii F775_25077 I
F775_32479 Aegilops tauschii F775_32479 I
AMTR_s00114p00031980 Amborella trichopoda AMTR_s00114p00031980 I
AMTR_s00132p00065700 Amborella trichopoda AMTR_s00132p00065700 I
fgenesh2_kg.1__328__AT1G03970.1 Arabidopsis lyrata fgenesh2_kg.1__328__AT1G03970.1 N
ABF4 Arabidopsis lyrata fgenesh2_kg.3__2145__AT3G19290.1 I
GBF4 Arabidopsis thaliana AT1G03970 N
ABF4 Arabidopsis thaliana AT3G19290 D
Bostr.19424s0732 Boechera stricta Bostr.19424s0732 I
Bostr.26675s0358 Boechera stricta Bostr.26675s0358 N
BRADI2G24120 Brachypodium distachyon BRADI2G24120 I
Bo5g004230 Brassica oleracea Bo5g004230 N
Bo5g115300 Brassica oleracea Bo5g115300 I
Bo7g067030 Brassica oleracea Bo7g067030 N
Bra015281 Brassica rapa Bra015281 N
Bra022409 Brassica rapa Bra022409 I
Bra037533 Brassica rapa Bra037533 I
PK02169.1 Cannabis sativa PK02169.1 I
Cagra.1671s0014 Capsella grandiflora Cagra.1671s0014 N
Cagra.4978s0002 Capsella grandiflora Cagra.4978s0002 I
Carubv10011573m.g Capsella rubella Carubv10011573m.g N
Carubv10013729m.g Capsella rubella Carubv10013729m.g I
evm.TU.supercontig_49.26 Carica papaya evm.TU.supercontig_49.26 I
Ca_01548 Cicer arietinum Ca_01548 I
Cla016272 Citrullus lanatus Cla016272 I
Ciclev10001159m.g Citrus clementina Ciclev10001159m.g I
Ciclev10002029m.g Citrus clementina Ciclev10002029m.g I
orange1.1g021624m.g Citrus sinensis orange1.1g021624m.g I
orange1.1g025340m.g Citrus sinensis orange1.1g025340m.g I
Cucsa.219780 Cucumis sativus Cucsa.219780 I
Eucgr.F02337 Eucalyptus grandis Eucgr.F02337 I
Thhalv10003246m.g Eutrema salsugineum Thhalv10003246m.g N
Thhalv10009710m.g Eutrema salsugineum Thhalv10009710m.g N
Thhalv10020772m.g Eutrema salsugineum Thhalv10020772m.g I
gene09110-v1.0-hybrid Fragaria vesca gene09110-v1.0-hybrid I
gene11837-v1.0-hybrid Fragaria vesca gene11837-v1.0-hybrid N
GLYMA04G04170 Glycine max GLYMA04G04170 I
GLYMA05G25200 Glycine max GLYMA05G25200 I
GLYMA06G04353 Glycine max GLYMA06G04353 I
GLYMA08G08220 Glycine max GLYMA08G08220 N
GLYMA10G36820 Glycine max GLYMA10G36820 N
Gorai.002G207000 Gossypium raimondii Gorai.002G207000 I
Gorai.005G259700 Gossypium raimondii Gorai.005G259700 I
Gorai.009G275700 Gossypium raimondii Gorai.009G275700 I
MLOC_34679 Hordeum vulgare MLOC_34679 I
MLOC_53321 Hordeum vulgare MLOC_53321 I
MLOC_64571 Hordeum vulgare MLOC_64571 I
LPERR01G32620 Leersia perrieri LPERR01G32620 I
LPERR05G14180 Leersia perrieri LPERR05G14180 I
Lus10014066.g Linum usitatissimum Lus10014066.g I
Lus10028575.g Linum usitatissimum Lus10028575.g N
chr5.CM0052.120.nc Lotus japonicus chr5.CM0052.120.nc N
MDP0000208334 Malus domestica MDP0000208334 N
MDP0000706379 Malus domestica MDP0000706379 I
cassava12275.valid.m1 Manihot esculenta cassava12275.valid.m1 I
cassava42669.valid.m1 Manihot esculenta cassava42669.valid.m1 I
MTR_1g098590 Medicago truncatula MTR_1g098590 N
MTR_3g101780 Medicago truncatula MTR_3g101780 I
mgf009464m Mimulus guttatus mgf009464m N
mgf020824m Mimulus guttatus mgf020824m I
GSMUA_Achr10G10440_001 Musa acuminata GSMUA_Achr10G10440_001 I
GSMUA_Achr3G22470_001 Musa acuminata GSMUA_Achr3G22470_001 I
GSMUA_Achr3G22710_001 Musa acuminata GSMUA_Achr3G22710_001 I
GSMUA_Achr9G08900_001 Musa acuminata GSMUA_Achr9G08900_001 N
OBART01G37980 Oryza barthii OBART01G37980 I
OBART05G17920 Oryza barthii OBART05G17920 I
OB01G46760 Oryza brachyantha OB01G46760 I
OB05G25740 Oryza brachyantha OB05G25740 I
ORGLA01G0317900 Oryza glaberrima ORGLA01G0317900 I
ORGLA02G0292000 Oryza glaberrima ORGLA02G0292000 I
ORGLA05G0154900 Oryza glaberrima ORGLA05G0154900 I
OGLUM01G42150 Oryza glumaepatula OGLUM01G42150 I
OGLUM05G18920 Oryza glumaepatula OGLUM05G18920 I
BGIOSGA004837 Oryza indica BGIOSGA004837 I
OLONG_014546 Oryza longistaminata OLONG_014546 I
OMERI01G34950 Oryza meridionalis OMERI01G34950 I
OMERI05G15500 Oryza meridionalis OMERI05G15500 I
ONIVA04G25730 Oryza nivara ONIVA04G25730 I
ONIVA05G18780 Oryza nivara ONIVA05G18780 I
ORUFI01G41310 Oryza rufipogon ORUFI01G41310 I
ORUFI05G19090 Oryza rufipogon ORUFI05G19090 I
LOC_Os05g36160 Oryza sativa LOC_Os05g36160 D
OS01G0859300 Oryza sativa OS01G0859300 I
Pavir.Da01931 Panicum virgatum Pavir.Da01931 I
Pavir.Ea03718 Panicum virgatum Pavir.Ea03718 I
Pavir.J05659 Panicum virgatum Pavir.J05659 I
Pavir.J06257 Panicum virgatum Pavir.J06257 I
Pavir.J35078 Panicum virgatum Pavir.J35078 I
POPTR_0002s06800 Populus trichocarpa POPTR_0002s06800 I
POPTR_0002s12710 Populus trichocarpa POPTR_0002s12710 I
POPTR_0005s21500 Populus trichocarpa POPTR_0005s21500 I
POPTR_0014s02810 Populus trichocarpa POPTR_0014s02810 I
30170.m013868 Ricinus communis 30170.m013868 I
SapurV1A.0134s0060 Salix purpurea SapurV1A.0134s0060 I
SapurV1A.0167s0060 Salix purpurea SapurV1A.0167s0060 I
SapurV1A.0625s0150 Salix purpurea SapurV1A.0625s0150 I
SapurV1A.0643s0160 Salix purpurea SapurV1A.0643s0160 I
SapurV1A.0878s0160 Salix purpurea SapurV1A.0878s0160 I
SapurV1A.3185s0030 Salix purpurea SapurV1A.3185s0030 I
Si003247m.g Setaria italica Si003247m.g I
Si006889m.g Setaria italica Si006889m.g I
Si017618m.g Setaria italica Si017618m.g I
Si030114m.g Setaria italica Si030114m.g I
Solyc01g104650.2 Solanum lycopersicum Solyc01g104650.2 I
Solyc01g108080.2 Solanum lycopersicum Solyc01g108080.2 I
PGSC0003DMG400006211 Solanum tuberosum PGSC0003DMG400006211 I
PGSC0003DMG400008011 Solanum tuberosum PGSC0003DMG400008011 I
PGSC0003DMG400025889 Solanum tuberosum PGSC0003DMG400025889 I
PGSC0003DMG400029774 Solanum tuberosum PGSC0003DMG400029774 I
Sb03g040970 Sorghum bicolor Sb03g040970 I
Sb07g022965 Sorghum bicolor Sb07g022965 I
Sb09g021580 Sorghum bicolor Sb09g021580 I
TCM_006432 Theobroma cacao TCM_006432 I
TCM_033824 Theobroma cacao TCM_033824 I
Traes_3AL_FC5523394 Triticum aestivum Traes_3AL_FC5523394 I
TRAES3BF099600130CFD_g Triticum aestivum TRAES3BF099600130CFD_g I
TRAES3BF111600130CFD_g Triticum aestivum TRAES3BF111600130CFD_g I
TRAES3BF111600160CFD_g Triticum aestivum TRAES3BF111600160CFD_g I
TRIUR3_19588 Triticum urartu TRIUR3_19588 I
TRIUR3_33995 Triticum urartu TRIUR3_33995 I
GRMZM2G033413 Zea mays GRMZM2G033413 I
GRMZM2G129247 Zea mays GRMZM2G129247 N
GRMZM2G132868 Zea mays GRMZM2G132868 I
GRMZM2G168079 Zea mays GRMZM2G168079 I
GRMZM5G858197 Zea mays GRMZM5G858197 I