Lus10031464.g (Linum usitatissimum)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Lus10031464.g T196645_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA16
M06897_2.00 		Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT		 Dap-seq
OMalley et al.(2016)
GATA16_col_a 		0.817 0.694
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10031464 GATA 29 64

Links

Other GATA family TFs
Other Linum usitatissimum TFs

132 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_43556 Aegilops tauschii F775_43556 I 0.805
AMTR_s00025p00250380 Amborella trichopoda AMTR_s00025p00250380 N 0.805
AMTR_s00147p00053080 Amborella trichopoda AMTR_s00147p00053080 N 0.820
fgenesh1_pm.C_scaffold_7002128 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7002128 I 0.814
GATA17 Arabidopsis lyrata fgenesh2_kg.3__1856__AT3G16870.1 I 0.814
GATA16 Arabidopsis lyrata scaffold_801309.1 I 0.828
GATA17 Arabidopsis thaliana AT3G16870 I 0.814
AT4G16141 Arabidopsis thaliana AT4G16141 I 0.814
GATA16 Arabidopsis thaliana AT5G49300 D 0.817
Bostr.15774s0060 Boechera stricta Bostr.15774s0060 I 0.828
Bostr.28625s0006 Boechera stricta Bostr.28625s0006 I 0.814
Bostr.30275s0055 Boechera stricta Bostr.30275s0055 I 0.814
BRADI1G03020 Brachypodium distachyon BRADI1G03020 I 0.836
BRADI2G62660 Brachypodium distachyon BRADI2G62660 I 0.809
Bo00847s050 Brassica oleracea Bo00847s050 I 0.828
Bo1g055120 Brassica oleracea Bo1g055120 I 0.814
Bo1g122970 Brassica oleracea Bo1g122970 I 0.814
Bo3g068560 Brassica oleracea Bo3g068560 I 0.814
Bo5g123610 Brassica oleracea Bo5g123610 I 0.814
Bo7g104200 Brassica oleracea Bo7g104200 I 0.814
Bra012742 Brassica rapa Bra012742 I 0.814
Bra021209 Brassica rapa Bra021209 I 0.814
Bra022184 Brassica rapa Bra022184 I 0.814
Bra033533 Brassica rapa Bra033533 I 0.814
PK18820.1 Cannabis sativa PK18820.1 I 0.833
PK21934.1 Cannabis sativa PK21934.1 I 0.847
Cagra.0053s0014 Capsella grandiflora Cagra.0053s0014 I 0.814
Cagra.5497s0020 Capsella grandiflora Cagra.5497s0020 I 0.814
Carubv10005860m.g Capsella rubella Carubv10005860m.g I 0.814
Carubv10014665m.g Capsella rubella Carubv10014665m.g I 0.814
Carubv10027332m.g Capsella rubella Carubv10027332m.g I 0.828
evm.TU.supercontig_151.51 Carica papaya evm.TU.supercontig_151.51 I 0.847
evm.TU.supercontig_48.133 Carica papaya evm.TU.supercontig_48.133 I 0.847
evm.TU.supercontig_9.102 Carica papaya evm.TU.supercontig_9.102 I 0.828
Ca_02992 Cicer arietinum Ca_02992 I 0.828
Cla009422 Citrullus lanatus Cla009422 I 0.833
Cla022104 Citrullus lanatus Cla022104 I 0.828
Ciclev10003698m.g Citrus clementina Ciclev10003698m.g I 0.833
Ciclev10006161m.g Citrus clementina Ciclev10006161m.g I 0.833
Ciclev10022856m.g Citrus clementina Ciclev10022856m.g I 0.820
orange1.1g030971m.g Citrus sinensis orange1.1g030971m.g I 0.833
orange1.1g032112m.g Citrus sinensis orange1.1g032112m.g I 0.833
orange1.1g033001m.g Citrus sinensis orange1.1g033001m.g I 0.820
Cucsa.069460 Cucumis sativus Cucsa.069460 I 0.833
Cucsa.252730 Cucumis sativus Cucsa.252730 I 0.828
Eucgr.A00193 Eucalyptus grandis Eucgr.A00193 I 0.828
Eucgr.H04023 Eucalyptus grandis Eucgr.H04023 I 0.833
Thhalv10005103m.g Eutrema salsugineum Thhalv10005103m.g I 0.828
Thhalv10021612m.g Eutrema salsugineum Thhalv10021612m.g I 0.814
Thhalv10026300m.g Eutrema salsugineum Thhalv10026300m.g I 0.814
gene05175-v1.0-hybrid Fragaria vesca gene05175-v1.0-hybrid I 0.828
GLYMA07G37190 Glycine max GLYMA07G37190 I 0.833
GLYMA17G03410 Glycine max GLYMA17G03410 I 0.833
Gorai.005G065300 Gossypium raimondii Gorai.005G065300 I 0.828
Gorai.007G125000 Gossypium raimondii Gorai.007G125000 I 0.847
Gorai.008G142200 Gossypium raimondii Gorai.008G142200 I 0.833
Gorai.013G127900 Gossypium raimondii Gorai.013G127900 I 0.847
MLOC_54886 Hordeum vulgare MLOC_54886 I 0.809
LPERR03G33900 Leersia perrieri LPERR03G33900 I 0.836
LPERR04G11580 Leersia perrieri LPERR04G11580 I 0.809
Lus10016849.g Linum usitatissimum Lus10016849.g I 0.828
Lus10037721.g Linum usitatissimum Lus10037721.g I 0.828
LjSGA_011217.1 Lotus japonicus LjSGA_011217.1 I 0.828
MDP0000309902 Malus domestica MDP0000309902 I 0.853
cassava15577.m1 Manihot esculenta cassava15577.m1 I 0.847
cassava15588.m1 Manihot esculenta cassava15588.m1 I 0.847
cassava37139.valid.m1 Manihot esculenta cassava37139.valid.m1 I 0.833
cassava43030.valid.m1 Manihot esculenta cassava43030.valid.m1 I 0.828
MTR_4g121110 Medicago truncatula MTR_4g121110 I 0.828
mgf003937m Mimulus guttatus mgf003937m I 0.828
mgf022078m Mimulus guttatus mgf022078m I 0.821
GSMUA_Achr1G14780_001 Musa acuminata GSMUA_Achr1G14780_001 N 0.809
GSMUA_Achr7G03800_001 Musa acuminata GSMUA_Achr7G03800_001 N 0.814
GSMUA_Achr8G33850_001 Musa acuminata GSMUA_Achr8G33850_001 N 0.809
OBART01G45830 Oryza barthii OBART01G45830 I 0.809
OBART03G39750 Oryza barthii OBART03G39750 I 0.836
OB01G55040 Oryza brachyantha OB01G55040 I 0.809
ORGLA01G0395900 Oryza glaberrima ORGLA01G0395900 I 0.809
OGLUM01G50190 Oryza glumaepatula OGLUM01G50190 I 0.809
OGLUM03G39650 Oryza glumaepatula OGLUM03G39650 I 0.836
BGIOSGA000005 Oryza indica BGIOSGA000005 I 0.809
BGIOSGA013867 Oryza indica BGIOSGA013867 I 0.836
BGIOSGA013869 Oryza indica BGIOSGA013869 I 0.836
OLONG_011157 Oryza longistaminata OLONG_011157 I 0.809
OLONG_023900 Oryza longistaminata OLONG_023900 I 0.836
OMERI03G36600 Oryza meridionalis OMERI03G36600 I 0.836
ONIVA01G52080 Oryza nivara ONIVA01G52080 I 0.809
ONIVA03G41600 Oryza nivara ONIVA03G41600 I 0.836
OPUNC03G36900 Oryza punctata OPUNC03G36900 I 0.836
OPUNC03G36910 Oryza punctata OPUNC03G36910 I 0.836
ORUFI01G49320 Oryza rufipogon ORUFI01G49320 I 0.809
ORUFI03G41540 Oryza rufipogon ORUFI03G41540 I 0.836
OS01G0976800 Oryza sativa OS01G0976800 I 0.809
OS03G0831200 Oryza sativa OS03G0831200 I 0.836
Pavir.Eb04066 Panicum virgatum Pavir.Eb04066 I 0.809
Pavir.J03766 Panicum virgatum Pavir.J03766 I 0.805
Pavir.J12379 Panicum virgatum Pavir.J12379 I 0.805
POPTR_0005s02040 Populus trichocarpa POPTR_0005s02040 I 0.847
POPTR_0008s22950 Populus trichocarpa POPTR_0008s22950 I 0.828
POPTR_0010s00360 Populus trichocarpa POPTR_0010s00360 I 0.828
Pm003128 Prunus mume Pm003128 I 0.807
Pm008287 Prunus mume Pm008287 I 0.828
PRUPE_ppa013171mg Prunus persica PRUPE_ppa013171mg I 0.828
PRUPE_ppa015310mg Prunus persica PRUPE_ppa015310mg I 0.807
29889.m003248 Ricinus communis 29889.m003248 I 0.833
30128.m008883 Ricinus communis 30128.m008883 N 0.820
SapurV1A.0107s0060 Salix purpurea SapurV1A.0107s0060 I 0.847
SapurV1A.0186s0560 Salix purpurea SapurV1A.0186s0560 I 0.847
SapurV1A.0739s0060 Salix purpurea SapurV1A.0739s0060 I 0.828
SapurV1A.2413s0010 Salix purpurea SapurV1A.2413s0010 I 0.828
Si002983m.g Setaria italica Si002983m.g I 0.809
Si037892m.g Setaria italica Si037892m.g I 0.805
Solyc01g060490.2 Solanum lycopersicum Solyc01g060490.2 N 0.802
Solyc01g100220.2 Solanum lycopersicum Solyc01g100220.2 I 0.821
Solyc05g054400.2 Solanum lycopersicum Solyc05g054400.2 I 0.819
Solyc12g099370.1 Solanum lycopersicum Solyc12g099370.1 I 0.833
PGSC0003DMG400002337 Solanum tuberosum PGSC0003DMG400002337 I 0.833
PGSC0003DMG400004624 Solanum tuberosum PGSC0003DMG400004624 I 0.833
PGSC0003DMG400023434 Solanum tuberosum PGSC0003DMG400023434 I 0.819
PGSC0003DMG400024783 Solanum tuberosum PGSC0003DMG400024783 I 0.821
Sb01g002270 Sorghum bicolor Sb01g002270 I 0.805
Sb03g047520 Sorghum bicolor Sb03g047520 I 0.809
TCM_004753 Theobroma cacao TCM_004753 I 0.833
TCM_021303 Theobroma cacao TCM_021303 I 0.828
TCM_026732 Theobroma cacao TCM_026732 I 0.847
Traes_3AL_6DE434492 Triticum aestivum Traes_3AL_6DE434492 I 0.809
TRAES3BF026000060CFD_g Triticum aestivum TRAES3BF026000060CFD_g I 0.809
Traes_5BL_F258582BB Triticum aestivum Traes_5BL_F258582BB I 0.805
TRIUR3_03165 Triticum urartu TRIUR3_03165 I 0.809
VIT_05s0077g01450 Vitis vinifera VIT_05s0077g01450 I 0.833
VIT_14s0060g01520 Vitis vinifera VIT_14s0060g01520 I 0.820
GRMZM2G114775 Zea mays GRMZM2G114775 I 0.805