Pavir.Ib04266 (Panicum virgatum)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Pavir.Ib04266 T196758_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ib04266.1.p GATA 217 254

Links

Other GATA family TFs
Other Panicum virgatum TFs

66 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_05698 Aegilops tauschii F775_05698 N 0.865
F775_32334 Aegilops tauschii F775_32334 N 0.857
Aquca_007_00525 Aquilegia coerulea Aquca_007_00525 N 0.825
Bostr.15774s0100 Boechera stricta Bostr.15774s0100 N 0.827
BRADI1G12330 Brachypodium distachyon BRADI1G12330 N 0.867
PK22222.1 Cannabis sativa PK22222.1 N 0.831
evm.TU.supercontig_21.35 Carica papaya evm.TU.supercontig_21.35 N 0.827
Ca_01470 Cicer arietinum Ca_01470 N 0.827
Cla022485 Citrullus lanatus Cla022485 N 0.831
Ciclev10028671m.g Citrus clementina Ciclev10028671m.g N 0.831
Ciclev10001533m.g Citrus clementina Ciclev10001533m.g N 0.831
orange1.1g017348m.g Citrus sinensis orange1.1g017348m.g N 0.831
orange1.1g017195m.g Citrus sinensis orange1.1g017195m.g N 0.831
Cucsa.160520 Cucumis sativus Cucsa.160520 N 0.831
Eucgr.F00433 Eucalyptus grandis Eucgr.F00433 N 0.831
gene26538-v1.0-hybrid Fragaria vesca gene26538-v1.0-hybrid N 0.831
GLYMA06G10290 Glycine max GLYMA06G10290 N 0.831
GLYMA04G10340 Glycine max GLYMA04G10340 N 0.827
Gorai.010G033400 Gossypium raimondii Gorai.010G033400 N 0.831
Gorai.005G226000 Gossypium raimondii Gorai.005G226000 N 0.827
Gorai.002G138300 Gossypium raimondii Gorai.002G138300 N 0.831
MLOC_57142 Hordeum vulgare MLOC_57142 N 0.862
MLOC_6017 Hordeum vulgare MLOC_6017 N 0.867
LPERR03G24620 Leersia perrieri LPERR03G24620 N 0.867
LjT45A20.140.nd Lotus japonicus LjT45A20.140.nd N 0.820
MDP0000192617 Malus domestica MDP0000192617 N 0.831
cassava2865.m1 Manihot esculenta cassava2865.m1 N 0.831
cassava1723.valid.m1 Manihot esculenta cassava1723.valid.m1 N 0.827
cassava6877.valid.m1 Manihot esculenta cassava6877.valid.m1 N 0.831
MTR_3g100040 Medicago truncatula MTR_3g100040 N 0.827
mgf001782m Mimulus guttatus mgf001782m N 0.831
OBART03G29860 Oryza barthii OBART03G29860 N 0.867
ORGLA01G0401200 Oryza glaberrima ORGLA01G0401200 N 0.867
OGLUM03G30120 Oryza glumaepatula OGLUM03G30120 N 0.867
GATA18 Oryza indica BGIOSGA010036 N 0.867
OLONG_006862 Oryza longistaminata OLONG_006862 N 0.867
OMERI03G26130 Oryza meridionalis OMERI03G26130 N 0.867
ONIVA03G31130 Oryza nivara ONIVA03G31130 N 0.867
OPUNC03G27170 Oryza punctata OPUNC03G27170 N 0.867
ORUFI03G31080 Oryza rufipogon ORUFI03G31080 N 0.867
GATA18 Oryza sativa OS03G0684000 N 0.867
Pavir.J38243 Panicum virgatum Pavir.J38243 N 0.867
XM_002302327.1 Populus trichocarpa POPTR_0002s11140 N 0.831
POPTR_0005s19550 Populus trichocarpa POPTR_0005s19550 N 0.831
POPTR_0007s03120 Populus trichocarpa POPTR_0007s03120 N 0.831
POPTR_0017s06970 Populus trichocarpa POPTR_0017s06970 N 0.831
Pm004389 Prunus mume Pm004389 N 0.831
PRUPE_ppa008377mg Prunus persica PRUPE_ppa008377mg N 0.831
29596.m000719 Ricinus communis 29596.m000719 N 0.831
29838.m001723 Ricinus communis 29838.m001723 N 0.836
SapurV1A.1216s0090 Salix purpurea SapurV1A.1216s0090 N 0.831
SapurV1A.0187s0160 Salix purpurea SapurV1A.0187s0160 N 0.836
SapurV1A.0004s0640 Salix purpurea SapurV1A.0004s0640 N 0.831
Si036492m.g Setaria italica Si036492m.g N 0.867
Solyc01g106040.2 Solanum lycopersicum Solyc01g106040.2 N 0.820
PGSC0003DMG400010684 Solanum tuberosum PGSC0003DMG400010684 N 0.820
PGSC0003DMG400009353 Solanum tuberosum PGSC0003DMG400009353 N 0.806
Sb01g011840 Sorghum bicolor Sb01g011840 N 0.867
TCM_034531 Theobroma cacao TCM_034531 N 0.831
TCM_007358 Theobroma cacao TCM_007358 N 0.831
Traes_4AL_B6992AAA6 Triticum aestivum Traes_4AL_B6992AAA6 N 0.862
Traes_4BS_ACD70539F Triticum aestivum Traes_4BS_ACD70539F N 0.862
Traes_4DS_AFCEDDE67 Triticum aestivum Traes_4DS_AFCEDDE67 N 0.867
TRIUR3_15386 Triticum urartu TRIUR3_15386 N 0.865
TRIUR3_23258 Triticum urartu TRIUR3_23258 N 0.827
VIT_18s0001g07730 Vitis vinifera VIT_18s0001g07730 N 0.831