CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava7265.valid.m1
(
Manihot esculenta
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
cassava7265.valid.m1
T202109_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava7265.valid.m1
GRAS
260
632
SRQTLLDAASAIYEGKNDVACEILTRVSQVLNPRVNSEHRLMEYMLMALKSRVNPFENPPPVAELYSKEHVSSTQLLYELSPCFKLGFMAANLAILEATVDQPNTSSSGFHVIDFDIGQGCQYMNLLHALSERMNGKPSTVKITAVADNIGEEKERLKVVGSTLSQLAEQFGVSLRFNVVSCKFGELSRESLGCDPEDPLAVNFAFNLYRMPDESVSTENPRDELLRRVKRLAPCVVTLVEQELNTNTAPFMARANEVISYYGALFESIESTVQRENSERVKVEEGLGRKLANSVACEGRERVERCEVFGKWRARMGMAGFELKPLSQKVTESMKGRLSSGKRVNPGFTVKEEHGGVSFGWMGKTLTFASAWS
Links
Other
GRAS
family TFs
Other
Manihot esculenta
TFs
12 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
evm.TU.supercontig_107.91
Carica papaya
evm.TU.supercontig_107.91
N
0.710
Ciclev10004502m.g
Citrus clementina
Ciclev10004502m.g
N
0.740
orange1.1g041667m.g
Citrus sinensis
orange1.1g041667m.g
N
0.740
Eucgr.A02754
Eucalyptus grandis
Eucgr.A02754
N
0.710
Gorai.007G012300
Gossypium raimondii
Gorai.007G012300
N
0.706
cassava18974.valid.m1
Manihot esculenta
cassava18974.valid.m1
N
0.847
POPTR_0004s07700
Populus trichocarpa
POPTR_0004s07700
N
0.734
POPTR_0017s01730
Populus trichocarpa
POPTR_0017s01730
N
0.721
30169.m006225
Ricinus communis
30169.m006225
N
0.847
SapurV1A.0147s0170
Salix purpurea
SapurV1A.0147s0170
N
0.707
SapurV1A.1012s0040
Salix purpurea
SapurV1A.1012s0040
N
0.728
TCM_015228
Theobroma cacao
TCM_015228
N
0.745