ATHB-8 (Arabidopsis lyrata)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 fgenesh2_kg.7__841__AT4G32880.1 T218485_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.866 0.964
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.866 0.964
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.861 0.911
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.861 0.911
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.861 0.911
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.7__841__AT4G32880.1 Homeodomain 13 72

Links

Other Homeodomain family TFs
Other Arabidopsis lyrata TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh2_kg.108__1__AT2G40200.1 Arabidopsis lyrata fgenesh2_kg.108__1__AT2G40200.1 I 0.000
Bra000177 Brassica rapa Bra000177 I 0.000
PK01630.1 Cannabis sativa PK01630.1 D 0.000
evm.TU.supercontig_19.156 Carica papaya evm.TU.supercontig_19.156 I 0.000
Ca_13402 Cicer arietinum Ca_13402 I 0.000
Ciclev10032356m.g Citrus clementina Ciclev10032356m.g I 0.000
orange1.1g023629m.g Citrus sinensis orange1.1g023629m.g I 0.000
Cucsa.136730 Cucumis sativus Cucsa.136730 I 0.000
Eucgr.J00190 Eucalyptus grandis Eucgr.J00190 I 0.000
gene21000-v1.0-hybrid Fragaria vesca gene21000-v1.0-hybrid I 0.000
GLYMA18G02940 Glycine max GLYMA18G02940 I 0.000
GLYMA11G35480 Glycine max GLYMA11G35480 I 0.000
GLYMA02G42570 Glycine max GLYMA02G42570 I 0.000
Gorai.012G078100 Gossypium raimondii Gorai.012G078100 I 0.000
Gorai.011G292100 Gossypium raimondii Gorai.011G292100 I 0.000
Lus10028978.g Linum usitatissimum Lus10028978.g I 0.000
Lus10007502.g Linum usitatissimum Lus10007502.g I 0.000
chr2.CM0002.120.nc Lotus japonicus chr2.CM0002.120.nc I 0.000
cassava37862.valid.m1 Manihot esculenta cassava37862.valid.m1 I 0.000
MTR_3g070970 Medicago truncatula MTR_3g070970 I 0.000
POPTR_0010s19400 Populus trichocarpa POPTR_0010s19400 I 0.000
POPTR_0008s07090 Populus trichocarpa POPTR_0008s07090 I 0.000
Pm018950 Prunus mume Pm018950 I 0.000
PRUPE_ppa010134mg Prunus persica PRUPE_ppa010134mg I 0.000
29814.m000735 Ricinus communis 29814.m000735 I 0.000
SapurV1A.0061s0470 Salix purpurea SapurV1A.0061s0470 I 0.000
Solyc03g095980.2 Solanum lycopersicum Solyc03g095980.2 I 0.000
PGSC0003DMG400027725 Solanum tuberosum PGSC0003DMG400027725 I 0.000
PGSC0003DMG400015659 Solanum tuberosum PGSC0003DMG400015659 I 0.000
TCM_042475 Theobroma cacao TCM_042475 I 0.000
VIT_13s0067g01350 Vitis vinifera VIT_13s0067g01350 I 0.000