Cmyd_10012400 (Chelonia mydas)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cmyd_10012400 T225731_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HESX1
M03187_2.00 		Homo sapiens
NHTAATTRVH
DBYAATTADN		 SELEX
Jolma et al.(2013)
HESX1_1 		0.656 0.237
HESX1
M03188_2.00 		Homo sapiens
NTAATTRGYAATTAD
HTAATTRCYAATTAN		 SELEX
Jolma et al.(2013)
HESX1_2 		0.656 0.237
HESX1
M05227_2.00 		Homo sapiens
DYAATTRV
BYAATTRH		 SELEX
Yin et al.(2017)
HESX1_FL_HT-SELEX 		0.656 0.237
HESX1
M05228_2.00 		Homo sapiens
NYAATTRD
HYAATTRN		 SELEX
Yin et al.(2017)
HESX1_FL_Methyl-HT-SELEX 		0.656 0.237
NOBOX
M09135_2.00 		Homo sapiens
HTAATTRVB
VBYAATTAD		 Misc
Kulakovskiy et al.(2013)
NOBOX_HUMAN.H11MO.0.C 		0.621 0.441
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10012400 Homeodomain 3165 3210
Cmyd_10012400 Homeodomain 3230 3242

Links

Other Homeodomain family TFs
Other Chelonia mydas TFs

128 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000004660 Ailuropoda melanoleuca ENSAMEG00000004660 N 0.635
ENSAMEG00000004942 Ailuropoda melanoleuca ENSAMEG00000004942 I 0.628
ANCCAN_10593 Ancylostoma caninum ANCCAN_10593 I 0.621
ANCCEY_04248 Ancylostoma ceylanicum ANCCEY_04248 N 0.604
ASIM_0001230001 Anisakis simplex ASIM_0001230001 I 0.687
ENSACAG00000002147 Anolis carolinensis ENSACAG00000002147 I 0.648
ACUA004306 Anopheles culicifacies ACUA004306 I 0.646
ADAC001468 Anopheles darlingi ADAC001468 I 0.694
ADAC008104 Anopheles darlingi ADAC008104 I 0.717
AFAF008499 Anopheles farauti AFAF008499 I 0.635
ASTEI06918 Anopheles stephensi ASTEI06918 N 0.627
ALUE_0000848601 Ascaris lumbricoides ALUE_0000848601 I 0.619
ALUE_0001497801 Ascaris lumbricoides ALUE_0001497801 I 0.656
BGLB004491 Biomphalaria glabrata BGLB004491 I 0.656
BGLB009341 Biomphalaria glabrata BGLB009341 I 0.681
BGLB013824 Biomphalaria glabrata BGLB013824 I 0.662
BGIBMGA003233 Bombyx mori BGIBMGA003233 I 0.678
ENSBTAP00000009672-D1 Bos grunniens ENSBTAP00000009672-D1 I 0.616
ENSP00000360811-D1 Bos grunniens ENSP00000360811-D1 I 0.664
ENSP00000419457-D1 Bos grunniens ENSP00000419457-D1 I 0.651
DLX4 Bos taurus ENSBTAG00000007353 I 0.616
DLX3 Bos taurus ENSBTAG00000017409 I 0.621
fgenesh2_pg.scaffold_23000163 Branchiostoma floridae fgenesh2_pg.scaffold_23000163 I 0.604
DBX1 Callithrix jacchus ENSCJAG00000006734 I 0.670
NOBOX Callithrix jacchus ENSCJAG00000009917 I 0.641
Aan_R011917 Calypte anna Aan_R011917 I 0.675
Cflo_02794--XP_001120105.1_APIME Camponotus floridanus Cflo_02794--XP_001120105.1_APIME I 0.707
Cflo_04174--XP_001120833.1_APIME Camponotus floridanus Cflo_04174--XP_001120833.1_APIME I 0.697
NOBOX Canis familiaris ENSCAFG00000003500 I 0.603
PRRX2 Cavia porcellus ENSCPOG00000021821 I 0.681
Cmyd_10001740 Chelonia mydas Cmyd_10001740 I 0.670
ENSCSAG00000007090 Chlorocebus sabaeus ENSCSAG00000007090 I 0.651
CLEC007171 Cimex lectularius CLEC007171 I 0.666
CGI_10009720 Crassostrea gigas CGI_10009720 I 0.615
CGI_10016653 Crassostrea gigas CGI_10016653 I 0.641
CpipJ_CPIJ006790 Culex pipiens CpipJ_CPIJ006790 N 0.603
CPIJ006790 Culex quinquefasciatus CPIJ006790 N 0.603
YQE_10100 Dendroctonus ponderosae YQE_10100 I 0.695
DICVIV_02647 Dictyocaulus viviparus DICVIV_02647 I 0.736
DICVIV_04104 Dictyocaulus viviparus DICVIV_04104 N 0.605
Dbx1 Dipodomys ordii ENSDORG00000009286 N 0.670
GF12207 Drosophila ananassae FBgn0089246 I 0.731
GF13343 Drosophila ananassae FBgn0090375 I 0.651
GK22877 Drosophila willistoni FBgn0224839 I 0.708
DBX1 Echinops telfairi ENSETEG00000017576 N 0.650
EEL_0000220001 Elaeophora elaphi EEL_0000220001 I 0.629
EVEC_0000357701 Enterobius vermicularis EVEC_0000357701 I 0.625
NOBOX Equus caballus ENSECAG00000003123 I 0.641
NOBOX Felis catus ENSFCAG00000004352 I 0.651
DBX1 Gorilla gorilla ENSGGOG00000014848 N 0.676
NOBOX Gorilla gorilla ENSGGOG00000022185 I 0.641
HCOI01026600 Haemonchus contortus HCOI01026600 I 0.613
HPLM_0000971301 Haemonchus placei HPLM_0000971301 I 0.686
HPLM_0001894101 Haemonchus placei HPLM_0001894101 I 0.624
HMEL006244 Heliconius melpomene HMEL006244 I 0.697
HPBE_0000873701 Heligmosomoides bakeri HPBE_0000873701 I 0.658
HelroG173001 Helobdella robusta HelroG173001 I 0.677
NOBOX Homo sapiens ENSG00000106410 D 0.621
HESX1 Homo sapiens ENSG00000163666 D 0.656
TTAC_0000027101 Hydatigera taeniaeformis TTAC_0000027101 I 0.665
TTAC_0000701101 Hydatigera taeniaeformis TTAC_0000701101 N 0.643
HDID_0000333701 Hymenolepis diminuta HDID_0000333701 N 0.723
HNAJ_0000529701 Hymenolepis nana HNAJ_0000529701 N 0.620
ENSSTOG00000026570 Ictidomys tridecemlineatus ENSSTOG00000026570 I 0.625
LDEC008146 Leptinotarsa decemlineata LDEC008146 I 0.639
nLs.2.1.2.g05836 Litomosoides sigmodontis nLs.2.1.2.g05836 I 0.636
ENSMMUP00000027138 Macaca fascicularis ENSMMUP00000027138 I 0.651
NOBOX Macaca mulatta ENSMMUG00000020609 I 0.651
ENSMGAG00000013900 Meleagris gallopavo ENSMGAG00000013900 I 0.626
MCINX007054 Melitaea cinxia MCINX007054 I 0.650
MCINX008871 Melitaea cinxia MCINX008871 I 0.682
MCOS_0000004601 Mesocestoides corti MCOS_0000004601 I 0.726
MCOS_0000655901 Mesocestoides corti MCOS_0000655901 N 0.633
DBX1 Microcebus murinus ENSMICG00000017111 N 0.649
ENSMODG00000001675 Monodelphis domestica ENSMODG00000001675 I 0.603
ENSMPUG00000007079 Mustela putorius furo ENSMPUG00000007079 I 0.651
Myotis_brandtii_NOBOX_10026198 Myotis brandtii Myotis_brandtii_NOBOX_10026198 I 0.651
NOBOX Myotis lucifugus ENSMLUG00000004209 I 0.641
DLX4 Myotis lucifugus ENSMLUG00000007268 I 0.616
NECAME_16530 Necator americanus NECAME_16530 I 0.646
NEMVEDRAFT_v1g198584 Nematostella vectensis NEMVEDRAFT_v1g198584 I 0.626
NBR_0000705501 Nippostrongylus brasiliensis NBR_0000705501 I 0.658
ENSNLEG00000003406 Nomascus leucogenys ENSNLEG00000003406 I 0.651
ENSNLEG00000017811 Nomascus leucogenys ENSNLEG00000017811 N 0.670
DBX1 Ochotona princeps ENSOPRG00000012954 N 0.660
OESDEN_01216 Oesophagostomum dentatum OESDEN_01216 I 0.610
SNAPOd2T00016706001 Oikopleura dioica SNAPOd2T00016706001 I 0.712
Ogr00185 Ophisaurus gracilis Ogr00185 N 0.647
Ogr03859 Ophisaurus gracilis Ogr03859 I 0.631
Ogr09065 Ophisaurus gracilis Ogr09065 I 0.744
T265_00628 Opisthorchis viverrini T265_00628 I 0.620
T265_02852 Opisthorchis viverrini T265_02852 I 0.709
T265_14002 Opisthorchis viverrini T265_14002 I 0.634
NOBOX Oryctolagus cuniculus ENSOCUG00000001027 I 0.668
DLX4 Oryctolagus cuniculus ENSOCUG00000022067 I 0.636
NOBOX Otolemur garnettii ENSOGAG00000010413 I 0.641
ENSOARG00000005572 Ovis aries ENSOARG00000005572 I 0.615
DBX1 Pan troglodytes ENSPTRG00000003437 N 0.670
NOBOX Pan troglodytes ENSPTRG00000019828 I 0.621
ENSPANG00000018829 Papio anubis ENSPANG00000018829 I 0.651
ENSPSIG00000014030 Pelodiscus sinensis ENSPSIG00000014030 I 0.636
PPAI007004 Phlebotomus papatasi PPAI007004 I 0.677
Pvit_13361 Pogona vitticeps Pvit_13361 I 0.638
ENSPPYG00000003422 Pongo abelii ENSPPYG00000003422 N 0.663
DBX1 Procavia capensis ENSPCAG00000004905 N 0.647
nRc.2.0.1.g34428 Romanomermis culicivorax nRc.2.0.1.g34428 I 0.720
SSLN_0001460801 Schistocephalus solidus SSLN_0001460801 I 0.672
SROB_0001564301 Schistosoma rodhaini SROB_0001564301 I 0.643
SINV13346 Solenopsis invicta SINV13346 I 0.645
L892_g24303 Steinernema scapterisci L892_g24303 I 0.725
SPU_004366 Strongylocentrotus purpuratus SPU_004366 I 0.723
meox1 Takifugu rubripes ENSTRUG00000005193 I 0.668
drgx Takifugu rubripes ENSTRUG00000013446 I 0.691
ENSTSYG00000000516 Tarsius syrichta ENSTSYG00000000516 I 0.650
ENSTSYG00000014450 Tarsius syrichta ENSTSYG00000014450 I 0.607
TELCIR_07728 Teladorsagia circumcincta TELCIR_07728 I 0.655
TELCIR_10796 Teladorsagia circumcincta TELCIR_10796 I 0.613
tetur14g02510 Tetranychus urticae tetur14g02510 I 0.640
TC000483 Tribolium castaneum TC000483 I 0.670
D917_01051 Trichinella nativa D917_01051 I 0.641
EFV53972 Trichinella spiralis EFV53972 N 0.605
EFV55592 Trichinella spiralis EFV55592 I 0.710
EFV57629 Trichinella spiralis EFV57629 I 0.641
TTRE_0000072001 Trichuris trichiura TTRE_0000072001 I 0.744
DBX1 Tursiops truncatus ENSTTRG00000000318 N 0.670
L798_02534 Zootermopsis nevadensis L798_02534 N 0.645
L798_06393 Zootermopsis nevadensis L798_06393 I 0.624
L798_11440 Zootermopsis nevadensis L798_11440 I 0.619