SROB_0001564301 (Schistosoma rodhaini)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SROB_0001564301 T236420_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HESX1
M03187_2.00 		Homo sapiens
NHTAATTRVH
DBYAATTADN		 SELEX
Jolma et al.(2013)
HESX1_1 		0.631 0.275
HESX1
M03188_2.00 		Homo sapiens
NTAATTRGYAATTAD
HTAATTRCYAATTAN		 SELEX
Jolma et al.(2013)
HESX1_2 		0.631 0.275
HESX1
M05227_2.00 		Homo sapiens
DYAATTRV
BYAATTRH		 SELEX
Yin et al.(2017)
HESX1_FL_HT-SELEX 		0.631 0.275
HESX1
M05228_2.00 		Homo sapiens
NYAATTRD
HYAATTRN		 SELEX
Yin et al.(2017)
HESX1_FL_Methyl-HT-SELEX 		0.631 0.275
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SROB_0001564301-mRNA-1 Homeodomain 377 405
SROB_0001564301-mRNA-1 Homeodomain 398 420

Links

Other Homeodomain family TFs
Other Schistosoma rodhaini TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
T265_02852 Opisthorchis viverrini T265_02852 I 0.787
ENSTSYG00000000516 Tarsius syrichta ENSTSYG00000000516 I 0.698
ENSLACG00000001487 Latimeria chalumnae ENSLACG00000001487 I 0.684
DBX1 Echinops telfairi ENSETEG00000017576 N 0.681
DBX1 Procavia capensis ENSPCAG00000004905 N 0.681
ENSAMEG00000004942 Ailuropoda melanoleuca ENSAMEG00000004942 I 0.679
scaffold251-EXSNAP2012.22 Pristionchus exspectatus scaffold251-EXSNAP2012.22 I 0.678
EVEC_0000357701 Enterobius vermicularis EVEC_0000357701 I 0.665
Ogr03859 Ophisaurus gracilis Ogr03859 I 0.664
LDEC008146 Leptinotarsa decemlineata LDEC008146 I 0.663
Dbx1 Dipodomys ordii ENSDORG00000009286 N 0.661
DBX1 Gorilla gorilla ENSGGOG00000014848 N 0.661
ENSNLEG00000017811 Nomascus leucogenys ENSNLEG00000017811 N 0.661
DBX1 Ochotona princeps ENSOPRG00000012954 N 0.661
DBX1 Pan troglodytes ENSPTRG00000003437 N 0.661
DBX1 Tursiops truncatus ENSTTRG00000000318 N 0.661
TTAC_0001021101 Hydatigera taeniaeformis TTAC_0001021101 N 0.661
ACUA026833 Anopheles culicifacies ACUA026833 I 0.660
AMAM000848 Anopheles maculatus AMAM000848 I 0.660
ENSPSIG00000014030 Pelodiscus sinensis ENSPSIG00000014030 I 0.659
ENSPPYG00000003422 Pongo abelii ENSPPYG00000003422 N 0.654
HNAJ_0000529701 Hymenolepis nana HNAJ_0000529701 N 0.650
BGLB013824 Biomphalaria glabrata BGLB013824 I 0.646
Cmyd_10012400 Chelonia mydas Cmyd_10012400 I 0.643
BGIBMGA003233 Bombyx mori BGIBMGA003233 I 0.642
ENSCSAVG00000000940 Ciona savignyi ENSCSAVG00000000940 I 0.639
maker-nMf.1.1.scaf02843-snap-gene-0.9 Meloidogyne floridensis maker-nMf.1.1.scaf02843-snap-gene-0.9 N 0.637
ENSFCAG00000029037 Felis catus ENSFCAG00000029037 I 0.636
DBX1 Callithrix jacchus ENSCJAG00000006734 I 0.635
DBX1 Microcebus murinus ENSMICG00000017111 N 0.635
tetur14g02510 Tetranychus urticae tetur14g02510 I 0.635
Gfo_R002825 Geospiza fortis Gfo_R002825 I 0.634
Ogr00185 Ophisaurus gracilis Ogr00185 N 0.632
HESX1 Homo sapiens ENSG00000163666 D 0.631
MCINX008871 Melitaea cinxia MCINX008871 I 0.631
NBR_0000705501 Nippostrongylus brasiliensis NBR_0000705501 I 0.631
PEQ_0001388201 Parascaris equorum PEQ_0001388201 I 0.631
ENSTSYG00000014450 Tarsius syrichta ENSTSYG00000014450 I 0.628
ENSP00000360811-D1 Bos grunniens ENSP00000360811-D1 I 0.628
Aan_R011917 Calypte anna Aan_R011917 I 0.627
SBAD_0000602401 Soboliphyme baturini SBAD_0000602401 I 0.627
HPBE_0000873701 Heligmosomoides bakeri HPBE_0000873701 I 0.626
CGI_10009720 Crassostrea gigas CGI_10009720 I 0.625
DICVIV_04104 Dictyocaulus viviparus DICVIV_04104 N 0.622
tetur02g13510 Tetranychus urticae tetur02g13510 I 0.621
Cmyd_10001740 Chelonia mydas Cmyd_10001740 I 0.621
OESDEN_01216 Oesophagostomum dentatum OESDEN_01216 I 0.621
ENSAMEG00000004660 Ailuropoda melanoleuca ENSAMEG00000004660 N 0.620
HPLM_0001894101 Haemonchus placei HPLM_0001894101 I 0.618
PRRX2 Cavia porcellus ENSCPOG00000021821 I 0.616
L596_g8967 Steinernema carpocapsae L596_g8967 I 0.616
LHX6 Gorilla gorilla ENSGGOG00000008310 I 0.615
MCINX007054 Melitaea cinxia MCINX007054 I 0.615
nRc.2.0.1.g35501 Romanomermis culicivorax nRc.2.0.1.g35501 I 0.611
TELCIR_07728 Teladorsagia circumcincta TELCIR_07728 I 0.611
TC000483 Tribolium castaneum TC000483 I 0.609
DLX3 Bos taurus ENSBTAG00000017409 I 0.607
HDID_0000333701 Hymenolepis diminuta HDID_0000333701 N 0.605
HPLM_0000971301 Haemonchus placei HPLM_0000971301 I 0.605
ALUE_0000848601 Ascaris lumbricoides ALUE_0000848601 I 0.604
T265_00628 Opisthorchis viverrini T265_00628 I 0.604
CGI_10016653 Crassostrea gigas CGI_10016653 I 0.603
ADAC001468 Anopheles darlingi ADAC001468 I 0.600
ACUA004306 Anopheles culicifacies ACUA004306 I 0.600
ASIM_0001230001 Anisakis simplex ASIM_0001230001 I 0.600
MCOS_0000004601 Mesocestoides corti MCOS_0000004601 I 0.600
CLEC007171 Cimex lectularius CLEC007171 I 0.599
ALUE_0001497801 Ascaris lumbricoides ALUE_0001497801 I 0.599
nLs.2.1.2.g05836 Litomosoides sigmodontis nLs.2.1.2.g05836 I 0.599