CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Myotis_brandtii_Meox2_10031759 *(Myotis brandtii)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00046 (Homeobox)	IPR001356	Myotis_brandtii_Meox2_10031759	T226407_2.00	GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
MEOX2 M03103_2.00	Homo sapiens	NNTRATKASN	NSTMATYANN	SELEX Jolma et al.(2013) MEOX2_1	0.867	1.000
MEOX2 M03104_2.00	Homo sapiens	NTAATTANVNTAATTAV	BTAATTANBNTAATTAN	SELEX Jolma et al.(2013) MEOX2_2	0.867	1.000
MEOX2 M03105_2.00	Homo sapiens	HTAATGATGATKAN	NTMATCATCATTAD	SELEX Jolma et al.(2013) MEOX2_3	0.867	1.000
Meox2 M03271_2.00	Mus musculus	NTAATKAN	NTMATTAN	SELEX Jolma et al.(2013) Meox2_1	0.867	1.000
MEOX2 M04988_2.00	Homo sapiens	NTDAYGHB	VDCRTHAN	SELEX Yin et al.(2017) MEOX2_FL_HT-SELEX_1	0.867	1.000
MEOX2 M04989_2.00	Homo sapiens	NTVATBRV	BYVATBAN	SELEX Yin et al.(2017) MEOX2_FL_HT-SELEX_2	0.867	1.000
Meox2 M10771_2.00	Rattus norvegicus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MEOX2_05	0.867	1.000
MEOX2 M04990_2.00	Homo sapiens	NTAAYGHB	VDCRTTAN	SELEX Yin et al.(2017) MEOX2_FL_Methyl-HT-SELEX_1	0.867	1.000
MEOX2 M04991_2.00	Homo sapiens	NTVATKRN	NYMATBAN	SELEX Yin et al.(2017) MEOX2_FL_Methyl-HT-SELEX_2	0.867	1.000
Meox1 M00384_2.00	Mus musculus	NTRATKRNN	NNYMATYAN	PBM Berger et al.(2008) Meox1_2310	0.822	0.965
MEOX1 M03077_2.00	Homo sapiens	NNTAATTASN	NSTAATTANN	SELEX Jolma et al.(2013) MEOX1_1	0.822	0.965
MEOX1 M04901_2.00	Homo sapiens	NTDAYGHB	VDCRTHAN	SELEX Yin et al.(2017) MEOX1_FL_HT-SELEX_1	0.822	0.965
MEOX1 M04902_2.00	Homo sapiens	NTMATKRN	NYMATKAN	SELEX Yin et al.(2017) MEOX1_FL_HT-SELEX_2	0.822	0.965
MEOX1 M04903_2.00	Homo sapiens	NTAAYGWB	VWCRTTAN	SELEX Yin et al.(2017) MEOX1_FL_Methyl-HT-SELEX_1	0.822	0.965
MEOX1 M04904_2.00	Homo sapiens	NTAATKRN	NYMATTAN	SELEX Yin et al.(2017) MEOX1_FL_Methyl-HT-SELEX_2	0.822	0.965
btn M03832_2.00	Drosophila melanogaster	NNTAATKANB	VNTMATTANN	SELEX Nitta et al.(2015) btn_1	0.785	0.807
btn M03833_2.00	Drosophila melanogaster	VNTAATKABN	NVTMATTANB	SELEX Nitta et al.(2015) btn_2	0.785	0.807
btn M06515_2.00	Drosophila melanogaster	DTAATKA	TMATTAH	B1H Mathelier et al.(2014) MA0215.1	0.785	0.807
btn M06307_2.00	Drosophila melanogaster	NDTAATKA	TMATTAHN	B1H Zhu et al.(2011) Btn_Cell_FBgn0014949	0.785	0.807
btn M06308_2.00	Drosophila melanogaster	HTAATKA	TMATTAD	B1H Zhu et al.(2011) Btn_SOLEXA_FBgn0014949	0.785	0.807
vab-7 M02186_2.00	Caenorhabditis elegans	KTAATTAK	MTAATTAM	PBM Weirauch et al.(2014) pTH6104	0.781	0.596
Evx2 M00393_2.00	Mus musculus	NNTAAYNN	NNRTTANN	PBM Berger et al.(2008) Evx2_2645	0.781	0.614
Evx1 M00395_2.00	Mus musculus	NTAATBDNN	NNHVATTAN	PBM Berger et al.(2008) Evx1_3952	0.781	0.614
EVX1 M03102_2.00	Homo sapiens	NNTAATBRBN	NVYVATTANN	SELEX Jolma et al.(2013) EVX1_1	0.781	0.614
EVX2 M03215_2.00	Homo sapiens	NNTAATBRBN	NVYVATTANN	SELEX Jolma et al.(2013) EVX2_1	0.781	0.614
EVX1 M04985_2.00	Homo sapiens	VTAATKAB	VTMATTAB	SELEX Yin et al.(2017) EVX1_eDBD_HT-SELEX	0.781	0.614
EVX2 M05295_2.00	Homo sapiens	NTAATKAN	NTMATTAN	SELEX Yin et al.(2017) EVX2_eDBD_HT-SELEX	0.781	0.614
EVX2 M09158_2.00	Homo sapiens	NBTTTATKRCHNN	NNDGYMATAAAVN	Misc Kulakovskiy et al.(2013) EVX2_HUMAN.H11MO.0.A	0.781	0.614
Evx1 M09174_2.00	Mus musculus	WGATTTATDRBHN	NDVYHATAAATCW	Misc Kulakovskiy et al.(2013) EVX1_MOUSE.H11MO.0.C	0.781	0.614
Evx2 M09173_2.00	Mus musculus	BTTTATKRCHBN	NVDGYMATAAAV	Misc Kulakovskiy et al.(2013) EVX2_MOUSE.H11MO.0.A	0.781	0.614
EVX2 M10736_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$EVX2_04	0.781	0.614
EVX1 M04986_2.00	Homo sapiens	NTMATKAN	NTMATKAN	SELEX Yin et al.(2017) EVX1_eDBD_Methyl-HT-SELEX_1	0.781	0.614
EVX1 M04987_2.00	Homo sapiens	HTWAYGAB	VTCRTWAD	SELEX Yin et al.(2017) EVX1_eDBD_Methyl-HT-SELEX_2	0.781	0.614
EVX2 M05296_2.00	Homo sapiens	NTAATKAN	NTMATTAN	SELEX Yin et al.(2017) EVX2_eDBD_Methyl-HT-SELEX_1	0.781	0.614
EVX2 M05297_2.00	Homo sapiens	HTAAYGAB	VTCRTTAD	SELEX Yin et al.(2017) EVX2_eDBD_Methyl-HT-SELEX_2	0.781	0.614
ventx1.1.L M02234_2.00	Xenopus laevis	NNNNVBNNNN	NNNNVBNNNN	PBM Weirauch et al.(2014) pTH6162	0.748	0.544
ventx1.2.S M10805_2.00	Xenopus laevis	RSRMAAATWBBVS	SBBBWATTTKYSY	Transfac Matys et al.(2006) V$XVENT1_01	0.748	0.544
HOXA2 M02083_2.00	Homo sapiens	NNNDHHNNN	NNNDDHNNN	PBM Weirauch et al.(2014) pTH5887	0.738	0.684
Hoxa2 M00403_2.00	Mus musculus	NTAATKRNN	NNYMATTAN	PBM Berger et al.(2008) Hoxa2_3079	0.738	0.684
HOXA2 M03097_2.00	Homo sapiens	NBTAATKRNN	NNYMATTAVN	SELEX Jolma et al.(2013) HOXA2_1	0.738	0.684
HOXB2 M03213_2.00	Homo sapiens	NNTAATKRNN	NNYMATTANN	SELEX Jolma et al.(2013) HOXB2_1	0.738	0.684
Hoxa2 M03251_2.00	Mus musculus	NNTAATKRNN	NNYMATTANN	SELEX Jolma et al.(2013) Hoxa2_1	0.738	0.684
pb M03872_2.00	Drosophila melanogaster	NTRAYKRY	RYMRTYAN	SELEX Nitta et al.(2015) pb_1	0.738	0.684
HOXA2 M04962_2.00	Homo sapiens	NTAATKRV	BYMATTAN	SELEX Yin et al.(2017) HOXA2_eDBD_HT-SELEX	0.738	0.684
HOXA2 M04965_2.00	Homo sapiens	NTAATKAB	VTMATTAN	SELEX Yin et al.(2017) HOXA2_FL_HT-SELEX	0.738	0.684
HOXB2 M05292_2.00	Homo sapiens	BTAATKRV	BYMATTAV	SELEX Yin et al.(2017) HOXB2_eDBD_HT-SELEX	0.738	0.684
pb M06545_2.00	Drosophila melanogaster	YTAATKA	TMATTAR	B1H Mathelier et al.(2014) MA0238.1	0.738	0.684
pb M06366_2.00	Drosophila melanogaster	BYTAATKA	TMATTARV	B1H Zhu et al.(2011) Pb_Cell_FBgn0051481	0.738	0.684
pb M06367_2.00	Drosophila melanogaster	YTAATKA	TMATTAR	B1H Zhu et al.(2011) Pb_SOLEXA_FBgn0051481	0.738	0.684
Hoxa2 M09566_2.00	Mus musculus	DTGATKGATKDB	VHMATCMATCAH	Misc Heinz et al.(2010) mES-Hoxa2_Donaldson_et_al.	0.738	0.684
HOXA2 M04963_2.00	Homo sapiens	NTAATTAN	NTAATTAN	SELEX Yin et al.(2017) HOXA2_eDBD_Methyl-HT-SELEX_1	0.738	0.684
HOXA2 M04964_2.00	Homo sapiens	HTAAYGAB	VTCRTTAD	SELEX Yin et al.(2017) HOXA2_eDBD_Methyl-HT-SELEX_2	0.738	0.684
HOXA2 M04966_2.00	Homo sapiens	NTAATKAB	VTMATTAN	SELEX Yin et al.(2017) HOXA2_FL_Methyl-HT-SELEX_1	0.738	0.684
HOXA2 M04967_2.00	Homo sapiens	HTAAYGAB	VTCRTTAD	SELEX Yin et al.(2017) HOXA2_FL_Methyl-HT-SELEX_2	0.738	0.684
HOXB2 M05293_2.00	Homo sapiens	NTAATKRN	NYMATTAN	SELEX Yin et al.(2017) HOXB2_eDBD_Methyl-HT-SELEX_1	0.738	0.684
HOXB2 M05294_2.00	Homo sapiens	HTAAYGAB	VTCRTTAD	SELEX Yin et al.(2017) HOXB2_eDBD_Methyl-HT-SELEX_2	0.738	0.684
eve M00556_2.00	Drosophila melanogaster	NNTAATTARN	NYTAATTANN	PBM Busser et al.(2012a) Eve	0.736	0.579
eve M02115_2.00	Drosophila melanogaster	NTAATNDNN	NNHNATTAN	PBM Weirauch et al.(2014) pTH6436	0.736	0.579
eve M03794_2.00	Drosophila melanogaster	VYTAATKASN	NSTMATTARB	SELEX Nitta et al.(2015) eve_1	0.736	0.579
eve M06486_2.00	Drosophila melanogaster	YTAATKA	TMATTAR	B1H Mathelier et al.(2014) MA0221.1	0.736	0.579
eve M06240_2.00	Drosophila melanogaster	DYTAATKA	TMATTARH	B1H Zhu et al.(2011) Eve_Cell_FBgn0000606	0.736	0.579
eve M06241_2.00	Drosophila melanogaster	HKBTAAYNDTKY	RMAHNRTTAVMD	B1H Zhu et al.(2011) eve_FlyReg_FBgn0000606	0.736	0.579
eve M06242_2.00	Drosophila melanogaster	NYTAATKA	TMATTARN	B1H Zhu et al.(2011) Eve_SOLEXA_FBgn0000606	0.736	0.579
eve M09678_2.00	Drosophila melanogaster	NKHTAATKD	HMATTADMN	Misc Kulakovskiy et al.(2009) eve	0.736	0.579
eve M10786_2.00	Drosophila melanogaster	Transfac license required	Transfac license required	Transfac Matys et al.(2006) I$EVE_Q6	0.736	0.579
Mnx1 M00388_2.00	Mus musculus	NTAATBDNNN	NNNHVATTAN	PBM Berger et al.(2008) Hlxb9_3422	0.729	0.614
MNX1 M03143_2.00	Homo sapiens	NHTAATTRNH	DNYAATTADN	SELEX Jolma et al.(2013) MNX1_1	0.729	0.614
MNX1 M05126_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) MNX1_eDBD_HT-SELEX	0.729	0.614
MNX1 M05127_2.00	Homo sapiens	HTAAYGHB	VDCRTTAD	SELEX Yin et al.(2017) MNX1_eDBD_Methyl-HT-SELEX_1	0.729	0.614
MNX1 M05128_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) MNX1_eDBD_Methyl-HT-SELEX_2	0.729	0.614
exex M03871_2.00	Drosophila melanogaster	NNNNYAATTNNYDN	NHRNNAATTRNNNN	SELEX Nitta et al.(2015) exex_1	0.729	0.596
exex M06544_2.00	Drosophila melanogaster	BTAATTA	TAATTAV	B1H Mathelier et al.(2014) MA0224.1	0.729	0.596
exex M06364_2.00	Drosophila melanogaster	TAATTAV	BTAATTA	B1H Zhu et al.(2011) Exex_Cell_FBgn0041156	0.729	0.596
exex M06365_2.00	Drosophila melanogaster	TAATBR	YVATTA	B1H Zhu et al.(2011) Exex_SOLEXA_FBgn0041156	0.729	0.596
Dfd M03784_2.00	Drosophila melanogaster	VNTAAYKRBN	NVYMRTTANB	SELEX Nitta et al.(2015) Dfd_1	0.725	0.632
Dfd M03785_2.00	Drosophila melanogaster	VYTAATKAYN	NRTMATTARB	SELEX Nitta et al.(2015) Dfd_2	0.725	0.632
Dfd M06481_2.00	Drosophila melanogaster	YTAATGA	TCATTAR	B1H Mathelier et al.(2014) MA0186.1	0.725	0.632
Dfd M06226_2.00	Drosophila melanogaster	VYTAATGA	TCATTAAB	B1H Zhu et al.(2011) Dfd_Cell_FBgn0000439	0.725	0.632
Dfd M06227_2.00	Drosophila melanogaster	TTAATKRY	RYMATTAA	B1H Zhu et al.(2011) Dfd_FlyReg_FBgn0000439	0.725	0.632
Dfd M06228_2.00	Drosophila melanogaster	NBTAATKR	YMATTAVN	B1H Zhu et al.(2011) Dfd_SOLEXA_FBgn0000439	0.725	0.632
Dfd M09675_2.00	Drosophila melanogaster	TTAATKRB	VYMATTAA	Misc Kulakovskiy et al.(2009) Dfd	0.725	0.632
Dfd M10784_2.00	Drosophila melanogaster	NNNNRKTAATNNNNNN	NNNNNNATTAMYNNNN	Transfac Matys et al.(2006) I$DFD_01	0.725	0.632
Bsx M00516_2.00	Mus musculus	NTAAYBDNN	NNHVRTTAN	PBM Berger et al.(2008) Bsx_3483	0.701	0.509
bsh M02113_2.00	Drosophila melanogaster	NNTAAYBDNN	NNHVRTTANN	PBM Weirauch et al.(2014) pTH6569	0.701	0.509
BSX M03235_2.00	Homo sapiens	NTAATBRN	NYVATTAN	SELEX Jolma et al.(2013) BSX_1	0.701	0.509
bsh M03786_2.00	Drosophila melanogaster	TAATYTAATTA	TAATTARATTA	SELEX Nitta et al.(2015) bsh_1	0.701	0.509
bsh M03787_2.00	Drosophila melanogaster	TAATTRVWTAATKR	YMATTAWBYAATTA	SELEX Nitta et al.(2015) bsh_2	0.701	0.509
bsh M03788_2.00	Drosophila melanogaster	NTAATBRN	NYVATTAN	SELEX Nitta et al.(2015) bsh_3	0.701	0.509
BSX M05377_2.00	Homo sapiens	NTAAYGHB	VDCRTTAN	SELEX Yin et al.(2017) BSX_eDBD_HT-SELEX_1	0.701	0.509
BSX M05378_2.00	Homo sapiens	BTAATBRV	BYVATTAV	SELEX Yin et al.(2017) BSX_eDBD_HT-SELEX_2	0.701	0.509
bsh M06483_2.00	Drosophila melanogaster	YTAATBR	YVATTAR	B1H Mathelier et al.(2014) MA0214.1	0.701	0.509
bsh M06231_2.00	Drosophila melanogaster	HYTAATBRV	BYVATTARD	B1H Zhu et al.(2011) Bsh_Cell_FBgn0000529	0.701	0.509
bsh M06232_2.00	Drosophila melanogaster	NTAATKR	YMATTAN	B1H Zhu et al.(2011) Bsh_SOLEXA_FBgn0000529	0.701	0.509
BSX M05379_2.00	Homo sapiens	NTAAYGHB	VDCRTTAN	SELEX Yin et al.(2017) BSX_eDBD_Methyl-HT-SELEX_1	0.701	0.509
BSX M05380_2.00	Homo sapiens	NTAATKRN	NYMATTAN	SELEX Yin et al.(2017) BSX_eDBD_Methyl-HT-SELEX_2	0.701	0.509
Q9BJW6_9CNID M02215_2.00	Sarsia sp. Long Island Sound	NBTAATTAVN	NBTAATTAVN	PBM Weirauch et al.(2014) pTH6287	0.699	0.544
Q24780_9CNID M02205_2.00	Eleutheria dichotoma	NNYTAATTAMN	NKTAATTARNN	PBM Weirauch et al.(2014) pTH6308	0.690	0.544
Hoxa4 M00383_2.00	Mus musculus	NTAATBDNN	NNHVATTAN	PBM Berger et al.(2008) Hoxa4_3426	0.680	0.632
HOXA4 M05381_2.00	Homo sapiens	NTAATKRY	RYMATTAN	SELEX Yin et al.(2017) HOXA4_eDBD_HT-SELEX	0.680	0.632
HOXA4 M10755_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXA4_Q2	0.680	0.632
HOXA4 M05382_2.00	Homo sapiens	NTAAYGAY	RTCRTTAN	SELEX Yin et al.(2017) HOXA4_eDBD_Methyl-HT-SELEX	0.680	0.632
HOXC4 M00330_2.00	Homo sapiens	YTAATTRB	VYAATTAR	PBM Barrera et al.(2016) HOXC4_REF	0.680	0.614
Hoxa5 M00478_2.00	Mus musculus	NTAATNDNN	NNHNATTAN	PBM Berger et al.(2008) Hoxa5_3415	0.680	0.614
Hoxb4 M00479_2.00	Mus musculus	NTAATNDNN	NNHNATTAN	PBM Berger et al.(2008) Hoxb4_2627	0.680	0.614
Hoxb5 M00480_2.00	Mus musculus	NWDWTNNNN	NNNNAWHWN	PBM Berger et al.(2008) Hoxb5_3122	0.680	0.614
Hoxc4 M00530_2.00	Mus musculus	NWAATNDNN	NNHNATTWN	PBM Berger et al.(2008) Hoxc4_3491	0.680	0.614
HOXB5 M03125_2.00	Homo sapiens	NNKAATKRNN	NNYMATTMNN	SELEX Jolma et al.(2013) HOXB5_1	0.680	0.614
HOXA5 M04968_2.00	Homo sapiens	STAATKRS	SYMATTAS	SELEX Yin et al.(2017) HOXA5_eDBD_HT-SELEX	0.680	0.614
HOXA5 M04971_2.00	Homo sapiens	NTMATKRB	VYMATKAN	SELEX Yin et al.(2017) HOXA5_FL_HT-SELEX	0.680	0.614
HOXB4 M05343_2.00	Homo sapiens	YTAATKAY	RTMATTAR	SELEX Yin et al.(2017) HOXB4_FL_HT-SELEX	0.680	0.614
HOXB5 M05051_2.00	Homo sapiens	NTAATKRV	BYMATTAN	SELEX Yin et al.(2017) HOXB5_eDBD_HT-SELEX	0.680	0.614
HOXB5 M05054_2.00	Homo sapiens	STMATKAB	VTMATKAS	SELEX Yin et al.(2017) HOXB5_FL_HT-SELEX	0.680	0.614
HOXC4 M05385_2.00	Homo sapiens	NTAATKRN	NYMATTAN	SELEX Yin et al.(2017) HOXC4_FL_HT-SELEX	0.680	0.614
HOXD4 M05273_2.00	Homo sapiens	NTMATKRV	BYMATKAN	SELEX Yin et al.(2017) HOXD4_eDBD_HT-SELEX	0.680	0.614
HOXD4 M05276_2.00	Homo sapiens	NTAATKRB	VYMATTAN	SELEX Yin et al.(2017) HOXD4_FL_HT-SELEX	0.680	0.614
HOXB4 M09162_2.00	Homo sapiens	YTAATKRS	SYMATTAR	Misc Kulakovskiy et al.(2013) HXB4_HUMAN.H11MO.0.B	0.680	0.614
Hoxb4 M09204_2.00	Mus musculus	YTAATKRS	SYMATTAR	Misc Kulakovskiy et al.(2013) HXB4_MOUSE.H11MO.0.A	0.680	0.614
Hoxb4 M09576_2.00	Mus musculus	TGATDRATKRSN	NSYMATYHATCA	Misc Heinz et al.(2010) ES-Hoxb4_GSE34014	0.680	0.614
HOXA5 M10652_2.00	Homo sapiens	NGRDBKBDHNBAVTAATKRRGRDVDDDGSR	YSCHHHBHYCYYMATTABTVNDHVMVHYCN	Transfac Matys et al.(2006) V$HOX13_01	0.680	0.614
HOXA5 M08457_2.00	Homo sapiens	CDBWAATK	MATTWVHG	COMPILED Mathelier et al.(2014) MA0158.1	0.680	0.614
HOXC4 M00328_2.00	Homo sapiens	YTAATTAB	VTAATTAR	PBM Barrera et al.(2016) HOXC4_N178S	0.680	0.614
HOXC4 M00329_2.00	Homo sapiens	NTAATKRNN	NNYMATTAN	PBM Barrera et al.(2016) HOXC4_R158L	0.680	0.614
HOXA5 M04969_2.00	Homo sapiens	BTAATKRV	BYMATTAV	SELEX Yin et al.(2017) HOXA5_eDBD_Methyl-HT-SELEX_1	0.680	0.614
HOXA5 M04970_2.00	Homo sapiens	NTAAYGAY	RTCRTTAN	SELEX Yin et al.(2017) HOXA5_eDBD_Methyl-HT-SELEX_2	0.680	0.614
HOXA5 M04972_2.00	Homo sapiens	NTMATKRN	NYMATKAN	SELEX Yin et al.(2017) HOXA5_FL_Methyl-HT-SELEX_1	0.680	0.614
HOXA5 M04973_2.00	Homo sapiens	NTAAYGAY	RTCRTTAN	SELEX Yin et al.(2017) HOXA5_FL_Methyl-HT-SELEX_2	0.680	0.614
HOXB4 M05344_2.00	Homo sapiens	HTAAYGAY	RTCRTTAD	SELEX Yin et al.(2017) HOXB4_FL_Methyl-HT-SELEX_1	0.680	0.614
HOXB4 M05345_2.00	Homo sapiens	HTAAYKAB	VTMRTTAD	SELEX Yin et al.(2017) HOXB4_FL_Methyl-HT-SELEX_2	0.680	0.614
HOXB5 M05052_2.00	Homo sapiens	NTMATKRN	NYMATKAN	SELEX Yin et al.(2017) HOXB5_eDBD_Methyl-HT-SELEX_1	0.680	0.614
HOXB5 M05053_2.00	Homo sapiens	NTAAYGAY	RTCRTTAN	SELEX Yin et al.(2017) HOXB5_eDBD_Methyl-HT-SELEX_2	0.680	0.614
HOXB5 M05055_2.00	Homo sapiens	NTMATKAB	VTMATKAN	SELEX Yin et al.(2017) HOXB5_FL_Methyl-HT-SELEX_1	0.680	0.614
HOXB5 M05056_2.00	Homo sapiens	HTAAYGAY	RTCRTTAD	SELEX Yin et al.(2017) HOXB5_FL_Methyl-HT-SELEX_2	0.680	0.614
HOXC4 M05386_2.00	Homo sapiens	NTAATKRN	NYMATTAN	SELEX Yin et al.(2017) HOXC4_FL_Methyl-HT-SELEX_1	0.680	0.614
HOXC4 M05387_2.00	Homo sapiens	NTAAYGAY	RTCRTTAN	SELEX Yin et al.(2017) HOXC4_FL_Methyl-HT-SELEX_2	0.680	0.614
HOXD4 M05274_2.00	Homo sapiens	NTMATKRN	NYMATKAN	SELEX Yin et al.(2017) HOXD4_eDBD_Methyl-HT-SELEX_1	0.680	0.614
HOXD4 M05275_2.00	Homo sapiens	NTAAYGAY	RTCRTTAN	SELEX Yin et al.(2017) HOXD4_eDBD_Methyl-HT-SELEX_2	0.680	0.614
HOXD4 M05277_2.00	Homo sapiens	NTAATKRN	NYMATTAN	SELEX Yin et al.(2017) HOXD4_FL_Methyl-HT-SELEX_1	0.680	0.614
HOXD4 M05278_2.00	Homo sapiens	NTAAYGAY	RTCRTTAN	SELEX Yin et al.(2017) HOXD4_FL_Methyl-HT-SELEX_2	0.680	0.614
Hoxc5 M00422_2.00	Mus musculus	NWRATND	HNATYWN	PBM Berger et al.(2008) Hoxc5_2630	0.679	0.614
Pdx1 M00446_2.00	Mus musculus	NWRAYNNN	NNNRTYWN	PBM Berger et al.(2008) Ipf1_3815	0.675	0.579
PDX1 M03155_2.00	Homo sapiens	NTAATTRNNNYTAATTRN	NYAATTARNNNYAATTAN	SELEX Jolma et al.(2013) PDX1_1	0.675	0.579
PDX1 M03156_2.00	Homo sapiens	BTAATKRN	NYMATTAV	SELEX Jolma et al.(2013) PDX1_2	0.675	0.579
PDX1 M05161_2.00	Homo sapiens	YTAATKRB	VYMATTAR	SELEX Yin et al.(2017) PDX1_eDBD_HT-SELEX	0.675	0.579
PDX1 M09147_2.00	Homo sapiens	TGATWGATK	MATCWATCA	Misc Kulakovskiy et al.(2013) PDX1_HUMAN.H11MO.0.A	0.675	0.579
Pdx1 M09192_2.00	Mus musculus	VYTAATGRB	VYCATTARB	Misc Kulakovskiy et al.(2013) PDX1_MOUSE.H11MO.0.B	0.675	0.579
Pdx1 M09571_2.00	Mus musculus	TGATTRATKR	YMATYAATCA	Misc Heinz et al.(2010) Islet-Pdx1_SRA008281	0.675	0.579
PDX1 M10699_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$IPF1_01	0.675	0.579
PDX1 M10700_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$IPF1_02	0.675	0.579
PDX1 M10701_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$IPF1_03	0.675	0.579
PDX1 M10702_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$IPF1_04	0.675	0.579
PDX1 M10703_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$IPF1_05	0.675	0.579
PDX1 M10704_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$IPF1_Q4_01	0.675	0.579
PDX1 M10705_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$IPF1_Q4	0.675	0.579
PDX1 M10706_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$IPF1_Q5_01	0.675	0.579
PDX1 M10707_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$IPF1_Q5	0.675	0.579
PDX1 M10708_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$IPF1_Q6	0.675	0.579
PDX1 M05162_2.00	Homo sapiens	HTAAYGAB	VTCRTTAD	SELEX Yin et al.(2017) PDX1_eDBD_Methyl-HT-SELEX_1	0.675	0.579
PDX1 M05163_2.00	Homo sapiens	YTAATKRB	VYMATTAR	SELEX Yin et al.(2017) PDX1_eDBD_Methyl-HT-SELEX_2	0.675	0.579
SPU_026099 M02175_2.00	Strongylocentrotus purpuratus	KTAATTRB	VYAATTAM	PBM Weirauch et al.(2014) pTH6140	0.675	0.561
VENTX M02091_2.00	Homo sapiens	TTAATTAB	VTAATTAA	PBM Weirauch et al.(2014) pTH5490	0.672	0.561
VENTX M00305_2.00	Homo sapiens	DTAATTRR	YYAATTAH	PBM Barrera et al.(2016) VENTX_REF	0.672	0.561
VENTX M03169_2.00	Homo sapiens	YTAATBGNT	ANCVATTAR	SELEX Jolma et al.(2013) VENTX_1	0.672	0.561
VENTX M03170_2.00	Homo sapiens	VSYTAATSGRWAAMCGATTAG	CTAATCGKTTWYCSATTARSB	SELEX Jolma et al.(2013) VENTX_2	0.672	0.561
VENTX M05188_2.00	Homo sapiens	CGHTAATBG	CVATTADCG	SELEX Yin et al.(2017) VENTX_FL_HT-SELEX_1	0.672	0.561
VENTX M05189_2.00	Homo sapiens	VNTAATBRNN	NNYVATTANB	SELEX Yin et al.(2017) VENTX_FL_HT-SELEX_2	0.672	0.561
VENTX M05190_2.00	Homo sapiens	VHTAATKRNN	NNYMATTADB	SELEX Yin et al.(2017) VENTX_FL_Methyl-HT-SELEX	0.672	0.561
VENTX M00303_2.00	Homo sapiens	NVTAATTANNN	NNNTAATTABN	PBM Barrera et al.(2016) VENTX_E101K	0.672	0.544
VENTX M00304_2.00	Homo sapiens	NATAYATAB	VTATRTATN	PBM Barrera et al.(2016) VENTX_R143C	0.672	0.544
Scr M03799_2.00	Drosophila melanogaster	BTAATKRB	VYMATTAV	SELEX Nitta et al.(2015) Scr_1	0.667	0.614
Scr M06496_2.00	Drosophila melanogaster	YTAATKA	TMATTAR	B1H Mathelier et al.(2014) MA0203.1	0.667	0.614
Scr M06266_2.00	Drosophila melanogaster	HVYTAATKA	TMATTARBD	B1H Zhu et al.(2011) Scr_Cell_FBgn0003339	0.667	0.614
Scr M06267_2.00	Drosophila melanogaster	YTAATKR	YMATTAR	B1H Zhu et al.(2011) Scr_SOLEXA_FBgn0003339	0.667	0.614
zen M03805_2.00	Drosophila melanogaster	BTAATKRB	VYMATTAV	SELEX Nitta et al.(2015) zen_1	0.664	0.614
zen M06500_2.00	Drosophila melanogaster	YTAATKA	TMATTAR	B1H Mathelier et al.(2014) MA0256.1	0.664	0.614
zen M06276_2.00	Drosophila melanogaster	NBYTAATKA	TMATTARBN	B1H Zhu et al.(2011) Zen_Cell_FBgn0004053	0.664	0.614
zen M06277_2.00	Drosophila melanogaster	AANWTWAWTG	CAWTWAWNTT	B1H Zhu et al.(2011) zen_FlyReg_FBgn0004053	0.664	0.614
zen M06278_2.00	Drosophila melanogaster	NYTAATKA	TMATTARN	B1H Zhu et al.(2011) Zen_SOLEXA_FBgn0004053	0.664	0.614
zen2 M02118_2.00	Drosophila melanogaster	NNTAATKRNN	NNYMATTANN	PBM Weirauch et al.(2014) pTH5479	0.663	0.596
zen2 M03806_2.00	Drosophila melanogaster	BTAATKAS	STMATTAV	SELEX Nitta et al.(2015) zen2_1	0.663	0.596
zen2 M03807_2.00	Drosophila melanogaster	BTAATKWNNVRNNNNYBNNWMATTAV	BTAATKWNNVRNNNNYBNNWMATTAV	SELEX Nitta et al.(2015) zen2_2	0.663	0.596
zen2 M06501_2.00	Drosophila melanogaster	BTAATKA	TMATTAV	B1H Mathelier et al.(2014) MA0257.1	0.663	0.596
zen2 M06279_2.00	Drosophila melanogaster	HNBTAATKA	TMATTAVND	B1H Zhu et al.(2011) Zen2_Cell_FBgn0004054	0.663	0.596
zen2 M06280_2.00	Drosophila melanogaster	NNNTAATKRN	NYMATTANNN	B1H Zhu et al.(2011) zen2_SOLEXA_2_FBgn0004054	0.663	0.596
zen2 M06281_2.00	Drosophila melanogaster	YTAATKR	YMATTAR	B1H Zhu et al.(2011) Zen2_SOLEXA_FBgn0004054	0.663	0.596
Q0N4M8_NEMVE M02166_2.00	Nematostella vectensis	HTAATKAC	GTMATTAD	PBM Weirauch et al.(2014) pTH6215	0.660	0.596
lin-39 M08211_2.00	Caenorhabditis elegans	GATTGATG	CATCAATC	ChIP-seq Contrino et al.(2012) Mw154	0.660	0.632
lin-39 M09582_2.00	Caenorhabditis elegans	DTGATWRATK	MATYWATCAH	Misc Heinz et al.(2010) cElegans.L3-LIN39_modEncode	0.660	0.632
Hoxd3 M00531_2.00	Mus musculus	NTAATNDN	NHNATTAN	PBM Berger et al.(2008) Hoxd3_1742	0.660	0.579
Hoxa3 M00172_2.00	Mus musculus	NTAATKRNNN	NNNYMATTAN	PBM Badis et al.(2009) Hoxa3_2783	0.660	0.579
Hoxa3 M00532_2.00	Mus musculus	NTAATKRNN	NNYMATTAN	PBM Berger et al.(2008) Hoxa3_2783	0.660	0.579
Hoxd3 M03287_2.00	Mus musculus	NNTAATKRNN	NNYMATTANN	SELEX Jolma et al.(2013) Hoxd3_1	0.660	0.579
HOXD3 M05101_2.00	Homo sapiens	CTAATTAS	STAATTAG	SELEX Yin et al.(2017) HOXD3_FL_HT-SELEX	0.660	0.579
HOXA3 M10651_2.00	Homo sapiens	SVTWNDDKB	VMHHNWABS	Transfac Matys et al.(2006) V$HOXA3_01	0.660	0.579
HOXD3 M05102_2.00	Homo sapiens	YTAAYGAY	RTCRTTAR	SELEX Yin et al.(2017) HOXD3_FL_Methyl-HT-SELEX_1	0.660	0.579
HOXD3 M05103_2.00	Homo sapiens	CTAATKAC	GTMATTAG	SELEX Yin et al.(2017) HOXD3_FL_Methyl-HT-SELEX_2	0.660	0.579
Hoxb3 M00504_2.00	Mus musculus	NTAATKRNN	NNYMATTAN	PBM Berger et al.(2008) Hoxb3_1720	0.660	0.561
HOXB3 M03126_2.00	Homo sapiens	NBTAATKRNN	NNYMATTAVN	SELEX Jolma et al.(2013) HOXB3_1	0.660	0.561
lms M03863_2.00	Drosophila melanogaster	BTAATTRV	BYAATTAV	SELEX Nitta et al.(2015) CG13424_1	0.657	0.526
lms M03864_2.00	Drosophila melanogaster	HTWATTRDWTDATTRR	YYAATHAWHYAATWAD	SELEX Nitta et al.(2015) lms_1	0.657	0.526
lms M06536_2.00	Drosophila melanogaster	YTAATKR	YMATTAR	B1H Mathelier et al.(2014) MA0175.1	0.657	0.526
lms M06347_2.00	Drosophila melanogaster	NYTAATKR	YMATTARN	B1H Zhu et al.(2011) CG13424_Cell_FBgn0034520	0.657	0.526
lms M06348_2.00	Drosophila melanogaster	NNHTAATDRN	NYHATTADNN	B1H Zhu et al.(2011) CG13424_SOLEXA_2_FBgn0034520	0.657	0.526
lms M06349_2.00	Drosophila melanogaster	YTAATKR	YMATTAR	B1H Zhu et al.(2011) CG13424_SOLEXA_FBgn0034520	0.657	0.526
LBX1 M02090_2.00	Homo sapiens	NTAAYTRG	CYARTTAN	PBM Weirauch et al.(2014) pTH6404	0.656	0.561
lbl M00561_2.00	Drosophila melanogaster	NTAAYDRGN	NCYHRTTAN	PBM Busser et al.(2012a) Lbl	0.656	0.561
lbe M03822_2.00	Drosophila melanogaster	TAACRABV	BVTYGTTA	SELEX Nitta et al.(2015) lbe_1	0.656	0.561
lbe M03823_2.00	Drosophila melanogaster	BTVAKBRV	BYVMTBAV	SELEX Nitta et al.(2015) lbe_2	0.656	0.561
lbe M03824_2.00	Drosophila melanogaster	NTAATTRN	NYAATTAN	SELEX Nitta et al.(2015) lbe_3	0.656	0.561
lbe M03825_2.00	Drosophila melanogaster	TAAYRAKN	NMTYRTTA	SELEX Nitta et al.(2015) lbe_4	0.656	0.561
lbl M03815_2.00	Drosophila melanogaster	NTAAYKRG	CYMRTTAN	SELEX Nitta et al.(2015) lbl_1	0.656	0.561
lbl M03816_2.00	Drosophila melanogaster	NTAAYRAGN	NCTYRTTAN	SELEX Nitta et al.(2015) lbl_2	0.656	0.561
lbl M06508_2.00	Drosophila melanogaster	TAATKR	YMATTA	B1H Mathelier et al.(2014) MA0232.1	0.656	0.561
lbe M06510_2.00	Drosophila melanogaster	TAAYNA	TNRTTA	B1H Mathelier et al.(2014) MA0231.1	0.656	0.561
lbe M06299_2.00	Drosophila melanogaster	NHTAAYNA	TNRTTADN	B1H Zhu et al.(2011) Lbe_Cell_FBgn0011278	0.656	0.561
lbe M06300_2.00	Drosophila melanogaster	YTAAYBA	TVRTTAR	B1H Zhu et al.(2011) Lbe_SOLEXA_FBgn0011278	0.656	0.561
lbl M06295_2.00	Drosophila melanogaster	VHTAATKR	YMATTADB	B1H Zhu et al.(2011) Lbl_Cell_FBgn0008651	0.656	0.561
lbl M06296_2.00	Drosophila melanogaster	NHTAAYBA	TVRTTADN	B1H Zhu et al.(2011) Lbl_SOLEXA_FBgn0008651	0.656	0.561
Hoxa1 M00450_2.00	Mus musculus	NHRATKRNN	NNYMATYDN	PBM Berger et al.(2008) Hoxa1_3425	0.651	0.596
O76842_CUPSA M02199_2.00	Cupiennius salei	TTAATTAB	VTAATTAA	PBM Weirauch et al.(2014) pTH6251	0.651	0.596
HOXA1 M03096_2.00	Homo sapiens	NNTAATTRNN	NNYAATTANN	SELEX Jolma et al.(2013) HOXA1_1	0.651	0.596
lab M03797_2.00	Drosophila melanogaster	NTAATTAS	STAATTAN	SELEX Nitta et al.(2015) lab_1	0.651	0.596
HOXA1 M04959_2.00	Homo sapiens	NTMATKAN	NTMATKAN	SELEX Yin et al.(2017) HOXA1_FL_HT-SELEX	0.651	0.596
lab M06493_2.00	Drosophila melanogaster	TTAATKA	TMATTAA	B1H Mathelier et al.(2014) MA0230.1	0.651	0.596
lab M06260_2.00	Drosophila melanogaster	TTAATKA	TMATTAA	B1H Zhu et al.(2011) Lab_Cell_FBgn0002522	0.651	0.596
lab M06261_2.00	Drosophila melanogaster	YTAATKA	TMATTAR	B1H Zhu et al.(2011) Lab_SOLEXA_FBgn0002522	0.651	0.596
HOXA1 M09133_2.00	Homo sapiens	NKGATGGATG	CATCCATCMN	Misc Kulakovskiy et al.(2013) HXA1_HUMAN.H11MO.0.C	0.651	0.596
Hoxa1 M09196_2.00	Mus musculus	NKGATGGATG	CATCCATCMN	Misc Kulakovskiy et al.(2013) HXA1_MOUSE.H11MO.0.C	0.651	0.596
HOXA1 M04960_2.00	Homo sapiens	NTMATKAN	NTMATKAN	SELEX Yin et al.(2017) HOXA1_FL_Methyl-HT-SELEX_1	0.651	0.596
HOXA1 M04961_2.00	Homo sapiens	NTAAYGAB	VTCRTTAN	SELEX Yin et al.(2017) HOXA1_FL_Methyl-HT-SELEX_2	0.651	0.596
HOXB1 M05057_2.00	Homo sapiens	NTAATTAS	STAATTAN	SELEX Yin et al.(2017) HOXB1_eDBD_HT-SELEX	0.651	0.579
HOXB1 M05058_2.00	Homo sapiens	GTAATBAN	NTVATTAC	SELEX Yin et al.(2017) HOXB1_eDBD_Methyl-HT-SELEX_1	0.651	0.579
HOXB1 M05059_2.00	Homo sapiens	NTRAYGMB	VKCRTYAN	SELEX Yin et al.(2017) HOXB1_eDBD_Methyl-HT-SELEX_2	0.651	0.579
Nanog M02098_2.00	Mus musculus	NHDAYNDNN	NNHNRTHDN	PBM Weirauch et al.(2014) pTH5685	0.651	0.421
NANOG M05015_2.00	Homo sapiens	NYRABBVB	VBVVTYRN	SELEX Yin et al.(2017) NANOG_eDBD_HT-SELEX	0.651	0.421
NANOG M09139_2.00	Homo sapiens	NTYWRCATNWSAAWRVN	NBYWTTSWNATGYWRAN	Misc Kulakovskiy et al.(2013) NANOG_HUMAN.H11MO.0.A	0.651	0.421
Nanog M09176_2.00	Mus musculus	HTYWRMAWNWSAAWRVV	BBYWTTSWNWTKYWRAD	Misc Kulakovskiy et al.(2013) NANOG_MOUSE.H11MO.0.A	0.651	0.421
Nanog M09565_2.00	Mus musculus	BYTRATKGSY	RSCMATYARV	Misc Heinz et al.(2010) mES-Nanog_GSE11724	0.651	0.421
NANOG M10664_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NANOG_01	0.651	0.421
NANOG M10665_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NANOG_02	0.651	0.421
NANOG M10666_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NANOG_05	0.651	0.421
NANOG M10667_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NANOG_07	0.651	0.421
NANOG M10668_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NANOG_Q3	0.651	0.421
NANOG M10669_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NANOG_Q6	0.651	0.421
NANOG M05016_2.00	Homo sapiens	NHAAYGH	DCRTTDN	SELEX Yin et al.(2017) NANOG_eDBD_Methyl-HT-SELEX_1	0.651	0.421
NANOG M05017_2.00	Homo sapiens	NYRABKRN	NYMVTYRN	SELEX Yin et al.(2017) NANOG_eDBD_Methyl-HT-SELEX_2	0.651	0.421
Barx2 M00457_2.00	Mus musculus	NTAABNDNN	NNHNVTTAN	PBM Berger et al.(2008) Barx2_3447	0.649	0.491
BARX2 M04915_2.00	Homo sapiens	NTAAYKRTTWWN	NWWAAYMRTTAN	SELEX Yin et al.(2017) BARX2_FL_HT-SELEX	0.649	0.491
BARX2 M04916_2.00	Homo sapiens	NTAAYKRTTWWN	NWWAAYMRTTAN	SELEX Yin et al.(2017) BARX2_FL_Methyl-HT-SELEX	0.649	0.491
Barx1 M00413_2.00	Mus musculus	NNTAAYBDNN	NNHVRTTANN	PBM Berger et al.(2008) Barx1_2877	0.649	0.474
barx1 M02107_2.00	Tetraodon nigroviridis	NTAAYNNNN	NNNNRTTAN	PBM Weirauch et al.(2014) pTH6449	0.649	0.474
BARX1 M03144_2.00	Homo sapiens	TAATBGNWWWTTAATBR	YVATTAAWWWNCVATTA	SELEX Jolma et al.(2013) BARX1_1	0.649	0.474
BARX1 M03145_2.00	Homo sapiens	NTAATBRN	NYVATTAN	SELEX Jolma et al.(2013) BARX1_2	0.649	0.474
Barx1 M09181_2.00	Mus musculus	NNWAAKKGYTWH	DWARCMMTTWNN	Misc Kulakovskiy et al.(2013) BARX1_MOUSE.H11MO.0.C	0.649	0.474
ventx3.2 M02232_2.00	Xenopus tropicalis	ATTAATTA	TAATTAAT	PBM Weirauch et al.(2014) pTH6291	0.649	0.456
Gbx2 M00462_2.00	Mus musculus	NNDAHNN	NNDTHNN	PBM Berger et al.(2008) Gbx2_3110	0.648	0.596
Gbx1 M00525_2.00	Mus musculus	NNTAATNR	YNATTANN	PBM Berger et al.(2008) Gbx1_2883	0.648	0.596
GBX1 M03193_2.00	Homo sapiens	NBTAATTRSB	VSYAATTAVN	SELEX Jolma et al.(2013) GBX1_1	0.648	0.596
GBX2 M03201_2.00	Homo sapiens	NNTAATTRNN	NNYAATTANN	SELEX Jolma et al.(2013) GBX2_1	0.648	0.596
GBX2 M03202_2.00	Homo sapiens	TAATTRVBCAATWA	TWATTGVBYAATTA	SELEX Jolma et al.(2013) GBX2_2	0.648	0.596
GBX2 M03203_2.00	Homo sapiens	NNTAATTRNN	NNYAATTANN	SELEX Jolma et al.(2013) GBX2_3	0.648	0.596
Gbx1 M03286_2.00	Mus musculus	NNTAATTRNN	NNYAATTANN	SELEX Jolma et al.(2013) Gbx1_1	0.648	0.596
Gbx2 M03268_2.00	Mus musculus	NNTAATTRNN	NNYAATTANN	SELEX Jolma et al.(2013) Gbx2_1	0.648	0.596
unpg M03836_2.00	Drosophila melanogaster	SSTAATYRVN	NBYRATTASS	SELEX Nitta et al.(2015) unpg_1	0.648	0.596
GBX2 M05265_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) GBX2_eDBD_HT-SELEX	0.648	0.596
GBX2 M05268_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Yin et al.(2017) GBX2_FL_HT-SELEX	0.648	0.596
unpg M06517_2.00	Drosophila melanogaster	BTAATTR	YAATTAV	B1H Mathelier et al.(2014) MA0251.1	0.648	0.596
unpg M06311_2.00	Drosophila melanogaster	NBTAATTR	YAATTAVN	B1H Zhu et al.(2011) Unpg_Cell_FBgn0015561	0.648	0.596
unpg M06312_2.00	Drosophila melanogaster	HTAATTR	YAATTAD	B1H Zhu et al.(2011) Unpg_SOLEXA_FBgn0015561	0.648	0.596
GBX2 M05266_2.00	Homo sapiens	HTAAYGAB	VTCRTTAD	SELEX Yin et al.(2017) GBX2_eDBD_Methyl-HT-SELEX_1	0.648	0.596
GBX2 M05267_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) GBX2_eDBD_Methyl-HT-SELEX_2	0.648	0.596
GBX2 M05269_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) GBX2_FL_Methyl-HT-SELEX_1	0.648	0.596
GBX2 M05270_2.00	Homo sapiens	NTAAYGAB	VTCRTTAN	SELEX Yin et al.(2017) GBX2_FL_Methyl-HT-SELEX_2	0.648	0.596
MSX2 M00290_2.00	Homo sapiens	WDATNDNN	NNHNATHW	PBM Barrera et al.(2016) MSX2_REF	0.645	0.526
Msx2 M00414_2.00	Mus musculus	HRATKRNN	NNYMATYD	PBM Berger et al.(2008) Msx2_3449	0.645	0.526
Msx3 M00429_2.00	Mus musculus	TAATKDNN	NNHMATTA	PBM Berger et al.(2008) Msx3_3206	0.645	0.526
Msx1 M00501_2.00	Mus musculus	NHDATND	HNATHDN	PBM Berger et al.(2008) Msx1_3031	0.645	0.526
Dr M00555_2.00	Drosophila melanogaster	TAATTRNN	NNYAATTA	PBM Busser et al.(2012a) Msh	0.645	0.526
MSX1 M03184_2.00	Homo sapiens	TAATTRBHHNHTAATTRN	NYAATTADNDDVYAATTA	SELEX Jolma et al.(2013) MSX1_1	0.645	0.526
MSX1 M03185_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) MSX1_2	0.645	0.526
MSX1 M03186_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) MSX1_3	0.645	0.526
MSX2 M03127_2.00	Homo sapiens	TAATTRBHWKWTAATTGV	BCAATTAWMWDVYAATTA	SELEX Jolma et al.(2013) MSX2_1	0.645	0.526
MSX2 M03128_2.00	Homo sapiens	NTAATTGB	VCAATTAN	SELEX Jolma et al.(2013) MSX2_2	0.645	0.526
Msx3 M03255_2.00	Mus musculus	TAATTGSHHNNTAATTRN	NYAATTANNDDSCAATTA	SELEX Jolma et al.(2013) Msx3_1	0.645	0.526
Msx3 M03256_2.00	Mus musculus	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) Msx3_2	0.645	0.526
MSX1 M05221_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Yin et al.(2017) MSX1_eDBD_HT-SELEX	0.645	0.526
MSX1 M05224_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) MSX1_FL_HT-SELEX	0.645	0.526
MSX2 M05060_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) MSX2_eDBD_HT-SELEX	0.645	0.526
Dr M06482_2.00	Drosophila melanogaster	TAATTGS	SCAATTA	B1H Mathelier et al.(2014) MA0188.1	0.645	0.526
Dr M06229_2.00	Drosophila melanogaster	TAATTGSHB	VDSCAATTA	B1H Zhu et al.(2011) Dr_Cell_FBgn0000492	0.645	0.526
Dr M06230_2.00	Drosophila melanogaster	TAATTR	YAATTA	B1H Zhu et al.(2011) Dr_SOLEXA_FBgn0000492	0.645	0.526
MSX1 M10715_2.00	Homo sapiens	HNBTWWNTG	CANWWAVND	Transfac Matys et al.(2006) V$MSX1_01	0.645	0.526
MSX1 M10716_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MSX1_Q5_01	0.645	0.526
MSX1 M10717_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MSX1_Q5	0.645	0.526
MSX2 M10677_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MSX2_Q3	0.645	0.526
MSX2 M10678_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MSX2_Q6	0.645	0.526
MSX2 M00288_2.00	Homo sapiens	NTAATNDN	NHNATTAN	PBM Barrera et al.(2016) MSX2_P148H	0.645	0.526
MSX1 M05222_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) MSX1_eDBD_Methyl-HT-SELEX_1	0.645	0.526
MSX1 M05223_2.00	Homo sapiens	NTWAYGMB	VKCRTWAN	SELEX Yin et al.(2017) MSX1_eDBD_Methyl-HT-SELEX_2	0.645	0.526
MSX1 M05225_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) MSX1_FL_Methyl-HT-SELEX_1	0.645	0.526
MSX1 M05226_2.00	Homo sapiens	NTWAYGWB	VWCRTWAN	SELEX Yin et al.(2017) MSX1_FL_Methyl-HT-SELEX_2	0.645	0.526
MSX2 M05061_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) MSX2_eDBD_Methyl-HT-SELEX_1	0.645	0.526
MSX2 M05062_2.00	Homo sapiens	NTAAYGAB	VTCRTTAN	SELEX Yin et al.(2017) MSX2_eDBD_Methyl-HT-SELEX_2	0.645	0.526
NEMVEDRAFT_v1g164989 M02148_2.00	Nematostella vectensis	YTAATTAG	CTAATTAR	PBM Weirauch et al.(2014) pTH5994	0.643	0.491
B-H1 M03829_2.00	Drosophila melanogaster	VNTAAWYGNN	NNCRWTTANB	SELEX Nitta et al.(2015) B-H1_1	0.643	0.544
B-H1 M03830_2.00	Drosophila melanogaster	SNTAADBGN	NCVHTTANS	SELEX Nitta et al.(2015) B-H1_2	0.643	0.544
B-H1 M06512_2.00	Drosophila melanogaster	HTAAWYG	CRWTTAD	B1H Mathelier et al.(2014) MA0168.1	0.643	0.544
Barhl1 M00433_2.00	Mus musculus	NTAAWNRNN	NNYNWTTAN	PBM Berger et al.(2008) Barhl1_2590	0.641	0.544
Barhl1 M03258_2.00	Mus musculus	NNTAAWYGNH	DNCRWTTANN	SELEX Jolma et al.(2013) Barhl1_1	0.641	0.544
Barhl1 M03259_2.00	Mus musculus	NNTAADNRNN	NNYNHTTANN	SELEX Jolma et al.(2013) Barhl1_2	0.641	0.544
Barhl1 M03260_2.00	Mus musculus	TAAWYGNYNNTAAWYG	CRWTTANNRNCRWTTA	SELEX Jolma et al.(2013) Barhl1_3	0.641	0.544
BARHL1 M05091_2.00	Homo sapiens	NTAAWYGN	NCRWTTAN	SELEX Yin et al.(2017) BARHL1_eDBD_HT-SELEX_1	0.641	0.544
BARHL1 M05092_2.00	Homo sapiens	NTAADBGN	NCVHTTAN	SELEX Yin et al.(2017) BARHL1_eDBD_HT-SELEX_2	0.641	0.544
BARHL1 M05093_2.00	Homo sapiens	NTAADKGN	NCMHTTAN	SELEX Yin et al.(2017) BARHL1_eDBD_Methyl-HT-SELEX	0.641	0.544
B-H2 M03810_2.00	Drosophila melanogaster	VNTAAAYGNH	DNCRTTTANB	SELEX Nitta et al.(2015) B-H2_1	0.641	0.526
B-H2 M03811_2.00	Drosophila melanogaster	SNTAADBGN	NCVHTTANS	SELEX Nitta et al.(2015) B-H2_2	0.641	0.526
B-H2 M06503_2.00	Drosophila melanogaster	WTAATTG	CAATTAW	B1H Mathelier et al.(2014) MA0169.1	0.641	0.526
Barhl2 M00460_2.00	Mus musculus	NTAAWNRNN	NNYNWTTAN	PBM Berger et al.(2008) Barhl2_3868	0.641	0.509
BARHL2 M03157_2.00	Homo sapiens	NNTAAWYGNN	NNCRWTTANN	SELEX Jolma et al.(2013) BARHL2_1	0.641	0.509
BARHL2 M03158_2.00	Homo sapiens	NNTAAWBGNN	NNCVWTTANN	SELEX Jolma et al.(2013) BARHL2_2	0.641	0.509
BARHL2 M03159_2.00	Homo sapiens	TAAWYGNNNNTAAWYR	YRWTTANNNNCRWTTA	SELEX Jolma et al.(2013) BARHL2_3	0.641	0.509
BARHL2 M03160_2.00	Homo sapiens	NNTAAWYGNH	DNCRWTTANN	SELEX Jolma et al.(2013) BARHL2_4	0.641	0.509
BARHL2 M03161_2.00	Homo sapiens	NNTAAWYGNN	NNCRWTTANN	SELEX Jolma et al.(2013) BARHL2_5	0.641	0.509
BARHL2 M03162_2.00	Homo sapiens	TAAWYGNYNHTAAWYG	CRWTTADNRNCRWTTA	SELEX Jolma et al.(2013) BARHL2_6	0.641	0.509
BARHL2 M05164_2.00	Homo sapiens	HTAAAYGNY	RNCRTTTAD	SELEX Yin et al.(2017) BARHL2_eDBD_HT-SELEX_1	0.641	0.509
BARHL2 M05165_2.00	Homo sapiens	NTAAWTGNB	VNCAWTTAN	SELEX Yin et al.(2017) BARHL2_eDBD_HT-SELEX_2	0.641	0.509
BARHL2 M05167_2.00	Homo sapiens	NTAAWYGN	NCRWTTAN	SELEX Yin et al.(2017) BARHL2_FL_HT-SELEX_1	0.641	0.509
BARHL2 M05168_2.00	Homo sapiens	NTAAWYGN	NCRWTTAN	SELEX Yin et al.(2017) BARHL2_FL_HT-SELEX_2	0.641	0.509
BARHL2 M05166_2.00	Homo sapiens	NTAAWTGNB	VNCAWTTAN	SELEX Yin et al.(2017) BARHL2_eDBD_Methyl-HT-SELEX	0.641	0.509
BARHL2 M05169_2.00	Homo sapiens	NTAAWTGN	NCAWTTAN	SELEX Yin et al.(2017) BARHL2_FL_Methyl-HT-SELEX	0.641	0.509
ENSTNIG00000006040 M02106_2.00	Tetraodon nigroviridis	NNNBTAAWHRBNN	NNVYDWTTAVNNN	PBM Weirauch et al.(2014) pTH6503	0.641	0.491
HESX1 M00309_2.00	Homo sapiens	HTAATTRGN	NCYAATTAD	PBM Barrera et al.(2016) HESX1_REF	0.639	0.456
P79681_ACIBE M02200_2.00	Acipenser baerii	DTAATTRB	VYAATTAH	PBM Weirauch et al.(2014) pTH6156	0.639	0.456
HESX1 M00307_2.00	Homo sapiens	TAATTRNN	NNYAATTA	PBM Barrera et al.(2016) HESX1_N125S	0.639	0.456
HESX1 M00308_2.00	Homo sapiens	NATAHATRN	NYATDTATN	PBM Barrera et al.(2016) HESX1_R160C	0.639	0.439
MSX2 M00289_2.00	Homo sapiens	WDATWDNN	NNHWATHW	PBM Barrera et al.(2016) MSX2_R172H	0.638	0.509
TLX3 M05233_2.00	Homo sapiens	NAATKGNNNNNNNNNNNNNCAATTN	NAATTGNNNNNNNNNNNNNCMATTN	SELEX Yin et al.(2017) TLX3_eDBD_HT-SELEX	0.636	0.491
TLX3 M05235_2.00	Homo sapiens	NAATTGNNNNNHNNNNCAATTN	NAATTGNNNNDNNNNNCAATTN	SELEX Yin et al.(2017) TLX3_FL_HT-SELEX	0.636	0.491
TLX3 M05234_2.00	Homo sapiens	NAATTGNNNNNNNNNNDCAATTD	HAATTGHNNNNNNNNNNCAATTN	SELEX Yin et al.(2017) TLX3_eDBD_Methyl-HT-SELEX	0.636	0.491
TLX3 M05236_2.00	Homo sapiens	HAATTRNNNNNNNNNYHATTV	BAATDRNNNNNNNNNYAATTD	SELEX Yin et al.(2017) TLX3_FL_Methyl-HT-SELEX	0.636	0.491
NK7.1 M03847_2.00	Drosophila melanogaster	VTTAAAYGDTD	HAHCRTTTAAB	SELEX Nitta et al.(2015) NK7.1_1	0.634	0.544
NK7.1 M03848_2.00	Drosophila melanogaster	NSTTAATTGVY	RBCAATTAASN	SELEX Nitta et al.(2015) NK7.1_2	0.634	0.544
NK7.1 M06524_2.00	Drosophila melanogaster	TTAATDR	YHATTAA	B1H Mathelier et al.(2014) MA0196.1	0.634	0.544
NK7.1 M06323_2.00	Drosophila melanogaster	NTTAATDR	YHATTAAN	B1H Zhu et al.(2011) NK7.1_Cell_FBgn0024321	0.634	0.544
NK7.1 M06324_2.00	Drosophila melanogaster	YTAATDR	YHATTAR	B1H Zhu et al.(2011) NK7.1_SOLEXA_FBgn0024321	0.634	0.544
SNAPOd2T00006620001 M02231_2.00	Oikopleura dioica	NTAATTRN	NYAATTAN	PBM Weirauch et al.(2014) pTH5666	0.632	0.474
Hmx2 M00507_2.00	Mus musculus	NHRANYGNNN	NNNCRNTYDN	PBM Berger et al.(2008) Hmx2_3424	0.632	0.509
Hmx1 M00524_2.00	Mus musculus	NHDAKYRNNN	NNNYRMTHDN	PBM Berger et al.(2008) Hmx1_3423	0.632	0.509
HMX1 M03243_2.00	Homo sapiens	NNTTAAKTGNY	RNCAMTTAANN	SELEX Jolma et al.(2013) HMX1_1	0.632	0.509
HMX2 M03234_2.00	Homo sapiens	NNTTAAKTGNN	NNCAMTTAANN	SELEX Jolma et al.(2013) HMX2_1	0.632	0.509
HMX3 M03233_2.00	Homo sapiens	NNNTAAKTGNN	NNCAMTTANNN	SELEX Jolma et al.(2013) HMX3_1	0.632	0.509
Hmx M03882_2.00	Drosophila melanogaster	NYRAKYGN	NCRMTYRN	SELEX Nitta et al.(2015) Hmx_1	0.632	0.509
HMX1 M05392_2.00	Homo sapiens	BNYAAKTGN	NCAMTTRNV	SELEX Yin et al.(2017) HMX1_eDBD_HT-SELEX	0.632	0.509
HMX2 M05373_2.00	Homo sapiens	GNHRAKYGS	SCRMTYDNC	SELEX Yin et al.(2017) HMX2_eDBD_HT-SELEX	0.632	0.509
HMX2 M05375_2.00	Homo sapiens	NTTAAKTGNN	NNCAMTTAAN	SELEX Yin et al.(2017) HMX2_FL_HT-SELEX	0.632	0.509
Hmx M06554_2.00	Drosophila melanogaster	TTAATTG	CAATTAA	B1H Mathelier et al.(2014) MA0192.1	0.632	0.509
Hmx M06386_2.00	Drosophila melanogaster	TTAATTG	CAATTAA	B1H Zhu et al.(2011) Hmx_Cell_FBgn0085448	0.632	0.509
Hmx M06387_2.00	Drosophila melanogaster	TTAATTG	CAATTAA	B1H Zhu et al.(2011) Hmx_SOLEXA_FBgn0085448	0.632	0.509
HMX3 M10754_2.00	Homo sapiens	CAAGTGCGTG	CACGCACTTG	Transfac Matys et al.(2006) V$HMX1_01	0.632	0.509
HMX1 M05393_2.00	Homo sapiens	VNYAAKTGB	VCAMTTRNB	SELEX Yin et al.(2017) HMX1_eDBD_Methyl-HT-SELEX	0.632	0.509
HMX2 M05374_2.00	Homo sapiens	NNTAAKTGN	NCAMTTANN	SELEX Yin et al.(2017) HMX2_eDBD_Methyl-HT-SELEX	0.632	0.509
HMX2 M05376_2.00	Homo sapiens	NTTAAKTGNN	NNCAMTTAAN	SELEX Yin et al.(2017) HMX2_FL_Methyl-HT-SELEX	0.632	0.509
Hoxd1 M00492_2.00	Mus musculus	NRATNDNN	NNHNATYN	PBM Berger et al.(2008) Hoxd1_3448	0.631	0.561
HOXD1 M05098_2.00	Homo sapiens	BTAATTAV	BTAATTAV	SELEX Yin et al.(2017) HOXD1_eDBD_HT-SELEX	0.631	0.561
Hoxd1 M10768_2.00	Mus musculus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXD1_03	0.631	0.561
HOXD1 M05099_2.00	Homo sapiens	BTAATKAV	BTMATTAV	SELEX Yin et al.(2017) HOXD1_eDBD_Methyl-HT-SELEX_1	0.631	0.561
HOXD1 M05100_2.00	Homo sapiens	NTWAYGAB	VTCRTWAN	SELEX Yin et al.(2017) HOXD1_eDBD_Methyl-HT-SELEX_2	0.631	0.561
CG11085 M03857_2.00	Drosophila melanogaster	BTAAWYGN	NCRWTTAV	SELEX Nitta et al.(2015) CG11085_1	0.629	0.509
CG11085 M03858_2.00	Drosophila melanogaster	NTAAWCGN	NCGWTTAN	SELEX Nitta et al.(2015) CG11085_2	0.629	0.509
CG11085 M06532_2.00	Drosophila melanogaster	TTAATDG	CHATTAA	B1H Mathelier et al.(2014) MA0171.1	0.629	0.509
CG11085 M06339_2.00	Drosophila melanogaster	NTTAATDGV	BCHATTAAN	B1H Zhu et al.(2011) CG11085_Cell_FBgn0030408	0.629	0.509
CG11085 M06340_2.00	Drosophila melanogaster	NHTAAWBRNN	NNYVWTTADN	B1H Zhu et al.(2011) CG11085_SOLEXA_FBgn0030408	0.629	0.509
ESX1 M00292_2.00	Homo sapiens	NNTAATNDN	NHNATTANN	PBM Barrera et al.(2016) ESX1_REF	0.628	0.526
ESX1 M03137_2.00	Homo sapiens	NNTAATTRNN	NNYAATTANN	SELEX Jolma et al.(2013) ESX1_1	0.628	0.526
ESX1 M03138_2.00	Homo sapiens	NNTAATTRNN	NNYAATTANN	SELEX Jolma et al.(2013) ESX1_2	0.628	0.526
ESX1 M05087_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Yin et al.(2017) ESX1_eDBD_HT-SELEX	0.628	0.526
ESX1 M05089_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Yin et al.(2017) ESX1_FL_HT-SELEX	0.628	0.526
ESX1 M05088_2.00	Homo sapiens	NTAATTRR	YYAATTAN	SELEX Yin et al.(2017) ESX1_eDBD_Methyl-HT-SELEX	0.628	0.526
ESX1 M05090_2.00	Homo sapiens	NTAATTRR	YYAATTAN	SELEX Yin et al.(2017) ESX1_FL_Methyl-HT-SELEX	0.628	0.526
ems M02114_2.00	Drosophila melanogaster	NTAATKRNB	VNYMATTAN	PBM Weirauch et al.(2014) pTH5673	0.625	0.491
ems M03789_2.00	Drosophila melanogaster	BTAATTAN	NTAATTAV	SELEX Nitta et al.(2015) ems_1	0.625	0.491
ems M03790_2.00	Drosophila melanogaster	BTAATTAVBVBTAATKRN	NYMATTAVBVBTAATTAV	SELEX Nitta et al.(2015) ems_2	0.625	0.491
ems M03791_2.00	Drosophila melanogaster	BTAATKRN	NYMATTAV	SELEX Nitta et al.(2015) ems_3	0.625	0.491
ems M03792_2.00	Drosophila melanogaster	STAATKRSSSSTAATKRV	BYMATTASSSSYMATTAS	SELEX Nitta et al.(2015) ems_4	0.625	0.491
ems M06484_2.00	Drosophila melanogaster	HTAATKR	YMATTAD	B1H Mathelier et al.(2014) MA0219.1	0.625	0.491
ems M06233_2.00	Drosophila melanogaster	WHTAATKR	YMATTADW	B1H Zhu et al.(2011) Ems_Cell_FBgn0000576	0.625	0.491
ems M06234_2.00	Drosophila melanogaster	TSTMATHM	KDATKASA	B1H Zhu et al.(2011) ems_FlyReg_FBgn0000576	0.625	0.491
ems M06235_2.00	Drosophila melanogaster	YTAATKA	TMATTAR	B1H Zhu et al.(2011) Ems_SOLEXA_FBgn0000576	0.625	0.491
ems M09676_2.00	Drosophila melanogaster	WTWATGA	TCATWAW	Misc Kulakovskiy et al.(2009) ems	0.625	0.491
ro M06495_2.00	Drosophila melanogaster	YTAATTA	TAATTAR	B1H Mathelier et al.(2014) MA0241.1	0.624	0.544
ro M06264_2.00	Drosophila melanogaster	NYTAATTA	TAATTARN	B1H Zhu et al.(2011) Ro_Cell_FBgn0003267	0.624	0.544
ro M06265_2.00	Drosophila melanogaster	HTAATTR	YAATTAD	B1H Zhu et al.(2011) Ro_SOLEXA_FBgn0003267	0.624	0.544
Nkx1-1 M00442_2.00	Mus musculus	NNTAATNDNN	NNHNATTANN	PBM Berger et al.(2008) Nkx1-1_3856	0.621	0.544
Nkx1-2 M00503_2.00	Mus musculus	NNTAAWNDN	NHNWTTANN	PBM Berger et al.(2008) Nkx1-2_3214	0.621	0.544
slou M00557_2.00	Drosophila melanogaster	NNTAATDRN	NYHATTANN	PBM Busser et al.(2012a) Slou	0.621	0.544
slou M03798_2.00	Drosophila melanogaster	VBTAATTRSB	VSYAATTAVB	SELEX Nitta et al.(2015) slou_1	0.621	0.544
slou M06494_2.00	Drosophila melanogaster	YTAATKR	YMATTAR	B1H Mathelier et al.(2014) MA0245.1	0.621	0.544
slou M06262_2.00	Drosophila melanogaster	BYTAATKR	YMATTARV	B1H Zhu et al.(2011) Slou_Cell_FBgn0002941	0.621	0.544
slou M06263_2.00	Drosophila melanogaster	HTAATKR	YMATTAD	B1H Zhu et al.(2011) Slou_SOLEXA_FBgn0002941	0.621	0.544
HESX1 M00306_2.00	Homo sapiens	WRATDRNN	NNYHATYW	PBM Barrera et al.(2016) HESX1_E149K	0.618	0.439
Hmx3_CONSTRUCT M00537_2.00	PBM CONSTRUCTS	NHDADYRNN	NNYRHTHDN	PBM Berger et al.(2008) Hmx3_3490	0.618	0.491
ceh-62 M02187_2.00	Caenorhabditis elegans	NNYAATTRNN	NNYAATTRNN	PBM Weirauch et al.(2014) pTH5492	0.616	0.509
Hoxd12_CONSTRUCT M00538_2.00	PBM CONSTRUCTS	NWTWAYNDBN	NVHNRTWAWN	PBM Berger et al.(2008) Hoxd12_3481	0.615	0.526
HOXD12 M03206_2.00	Homo sapiens	SYAATAAAA	TTTTATTRS	SELEX Jolma et al.(2013) HOXD12_1	0.615	0.526
HOXD12 M03207_2.00	Homo sapiens	RVTCGTAAAAH	DTTTTACGABY	SELEX Jolma et al.(2013) HOXD12_2	0.615	0.526
HOXD12 M03208_2.00	Homo sapiens	NRTCGTAAAHN	NDTTTACGAYN	SELEX Jolma et al.(2013) HOXD12_3	0.615	0.526
HOXD12 M03209_2.00	Homo sapiens	DTTWATYRC	GYRATWAAH	SELEX Jolma et al.(2013) HOXD12_4	0.615	0.526
HOXD12 M05279_2.00	Homo sapiens	NKTWACGAYN	NRTCGTWAMN	SELEX Yin et al.(2017) HOXD12_eDBD_HT-SELEX	0.615	0.526
HOXD12 M05280_2.00	Homo sapiens	NRTCGTAAAH	DTTTACGAYN	SELEX Yin et al.(2017) HOXD12_eDBD_Methyl-HT-SELEX	0.615	0.526
ENSCING00000016045 M02078_2.00	Ciona intestinalis	NNYTAATTRGN	NCYAATTARNN	PBM Weirauch et al.(2014) pTH6551	0.614	0.404
Emx2 M00495_2.00	Mus musculus	NTAATDDNN	NNHHATTAN	PBM Berger et al.(2008) Emx2_3420	0.614	0.491
EMX2 M03210_2.00	Homo sapiens	NBTAATTANN	NNTAATTAVN	SELEX Jolma et al.(2013) EMX2_1	0.614	0.491
EMX2 M03211_2.00	Homo sapiens	YMATTARBTAATKR	YMATTAVYTAATKR	SELEX Jolma et al.(2013) EMX2_2	0.614	0.491
E5 M03814_2.00	Drosophila melanogaster	STAATKNN	NNMATTAS	SELEX Nitta et al.(2015) E5_1	0.614	0.491
EMX2 M05281_2.00	Homo sapiens	YTAATKAB	VTMATTAR	SELEX Yin et al.(2017) EMX2_eDBD_HT-SELEX	0.614	0.491
E5 M06507_2.00	Drosophila melanogaster	BTAATKA	TMATTAV	B1H Mathelier et al.(2014) MA0189.1	0.614	0.491
E5 M06293_2.00	Drosophila melanogaster	NBTAATKA	TMATTAVN	B1H Zhu et al.(2011) E5_Cell_FBgn0008646	0.614	0.491
E5 M06294_2.00	Drosophila melanogaster	NTAATDR	YHATTAN	B1H Zhu et al.(2011) E5_SOLEXA_FBgn0008646	0.614	0.491
EMX2 M05282_2.00	Homo sapiens	YTAATKAN	NTMATTAR	SELEX Yin et al.(2017) EMX2_eDBD_Methyl-HT-SELEX	0.614	0.491
EMX1 M02088_2.00	Homo sapiens	NNTAATKANN	NNTMATTANN	PBM Weirauch et al.(2014) pTH5677	0.614	0.474
EMX1 M03151_2.00	Homo sapiens	NBTAATTRNN	NNYAATTAVN	SELEX Jolma et al.(2013) EMX1_1	0.614	0.474
EMX1 M03152_2.00	Homo sapiens	YMATTARYTAATKR	YMATTARYTAATKR	SELEX Jolma et al.(2013) EMX1_2	0.614	0.474
EMX1 M05145_2.00	Homo sapiens	BTAATTAN	NTAATTAV	SELEX Yin et al.(2017) EMX1_eDBD_HT-SELEX	0.614	0.474
EMX1 M05147_2.00	Homo sapiens	BTAATTAV	BTAATTAV	SELEX Yin et al.(2017) EMX1_FL_HT-SELEX	0.614	0.474
EMX1 M05146_2.00	Homo sapiens	BTAATTRN	NYAATTAV	SELEX Yin et al.(2017) EMX1_eDBD_Methyl-HT-SELEX	0.614	0.474
EMX1 M05148_2.00	Homo sapiens	BTAATTAN	NTAATTAV	SELEX Yin et al.(2017) EMX1_FL_Methyl-HT-SELEX	0.614	0.474
Q24782_9CNID M02206_2.00	Eleutheria dichotoma	TTAATTAA	TTAATTAA	PBM Weirauch et al.(2014) pTH5486	0.612	0.632
NEMVEDRAFT_v1g8907 M02154_2.00	Nematostella vectensis	NTAATDRNNN	NNNYHATTAN	PBM Weirauch et al.(2014) pTH6483	0.610	0.544
Rax M00426_2.00	Mus musculus	NNTAATTRN	NYAATTANN	PBM Berger et al.(2008) Rax_3443	0.609	0.474
RAX M03149_2.00	Homo sapiens	NHTAATTRNN	NNYAATTADN	SELEX Jolma et al.(2013) RAX_1	0.609	0.474
Rx M03840_2.00	Drosophila melanogaster	BTAATTRV	BYAATTAV	SELEX Nitta et al.(2015) Rx_1	0.609	0.474
Rx M03841_2.00	Drosophila melanogaster	NTAATBNSATTAN	NTAATSNVATTAN	SELEX Nitta et al.(2015) Rx_2	0.609	0.474
RAX M05142_2.00	Homo sapiens	YYAATTRN	NYAATTRR	SELEX Yin et al.(2017) RAX_eDBD_HT-SELEX	0.609	0.474
Rx M06520_2.00	Drosophila melanogaster	YTAATTR	YAATTAR	B1H Mathelier et al.(2014) MA0202.1	0.609	0.474
Rx M06317_2.00	Drosophila melanogaster	VYTAATTR	YAATTARB	B1H Zhu et al.(2011) Rx_Cell_FBgn0020617	0.609	0.474
Rx M06318_2.00	Drosophila melanogaster	HTAATTR	YAATTAD	B1H Zhu et al.(2011) Rx_SOLEXA_FBgn0020617	0.609	0.474
Rax M10773_2.00	Rattus norvegicus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$RAX_04	0.609	0.474
RAX M05143_2.00	Homo sapiens	NTAAYRNN	NNYRTTAN	SELEX Yin et al.(2017) RAX_eDBD_Methyl-HT-SELEX_1	0.609	0.474
RAX M05144_2.00	Homo sapiens	YYAATTRN	NYAATTRR	SELEX Yin et al.(2017) RAX_eDBD_Methyl-HT-SELEX_2	0.609	0.474
RAX2 M03214_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) RAXL1_1	0.609	0.456
Lbx2 M00465_2.00	Mus musculus	NHAABNRN	NYNVTTDN	PBM Berger et al.(2008) Lbx2_3869	0.606	0.509
LBX2 M03224_2.00	Homo sapiens	TAAYYRSNTYNAB	VTNRANSYRRTTA	SELEX Jolma et al.(2013) LBX2_1	0.606	0.509
LBX2 M03225_2.00	Homo sapiens	NNTAATTRVN	NBYAATTANN	SELEX Jolma et al.(2013) LBX2_2	0.606	0.509
LBX2 M05321_2.00	Homo sapiens	HTAAYRAG	CTYRTTAD	SELEX Yin et al.(2017) LBX2_eDBD_HT-SELEX_1	0.606	0.509
LBX2 M05322_2.00	Homo sapiens	NTAATTAAYKRG	CYMRTTAATTAN	SELEX Yin et al.(2017) LBX2_eDBD_HT-SELEX_2	0.606	0.509
LBX2 M05323_2.00	Homo sapiens	VYTAATTRGB	VCYAATTARB	SELEX Yin et al.(2017) LBX2_eDBD_HT-SELEX_3	0.606	0.509
LBX2 M05324_2.00	Homo sapiens	HTAAYGAG	CTCRTTAD	SELEX Yin et al.(2017) LBX2_eDBD_Methyl-HT-SELEX_1	0.606	0.509
LBX2 M05325_2.00	Homo sapiens	ATAATTAATKAG	CTMATTAATTAT	SELEX Yin et al.(2017) LBX2_eDBD_Methyl-HT-SELEX_2	0.606	0.509
LBX2 M05326_2.00	Homo sapiens	NNTAATKRDN	NHYMATTANN	SELEX Yin et al.(2017) LBX2_eDBD_Methyl-HT-SELEX_3	0.606	0.509
Dlx3 M00387_2.00	Mus musculus	NTAATDRNN	NNYHATTAN	PBM Berger et al.(2008) Dlx3_1030	0.604	0.456
Dlx2 M00423_2.00	Mus musculus	NTAATNDNN	NNHNATTAN	PBM Berger et al.(2008) Dlx2_2273	0.604	0.456
Dll M02112_2.00	Drosophila melanogaster	NVTAATTANN	NNTAATTABN	PBM Weirauch et al.(2014) pTH5506	0.604	0.456
DLX2 M03118_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) DLX2_1	0.604	0.456
DLX3 M03081_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) DLX3_1	0.604	0.456
Dlx2 M03254_2.00	Mus musculus	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) Dlx2_1	0.604	0.456
Dll M03777_2.00	Drosophila melanogaster	NTAATTRN	NYAATTAN	SELEX Nitta et al.(2015) Dll_1	0.604	0.456
Dll M03778_2.00	Drosophila melanogaster	NTAATTRN	NYAATTAN	SELEX Nitta et al.(2015) Dll_2	0.604	0.456
DLX2 M05026_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX2_eDBD_HT-SELEX	0.604	0.456
DLX2 M05028_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX2_FL_HT-SELEX	0.604	0.456
DLX3 M04922_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX3_eDBD_HT-SELEX	0.604	0.456
DLX3 M04925_2.00	Homo sapiens	NTAATTRB	VYAATTAN	SELEX Yin et al.(2017) DLX3_FL_HT-SELEX	0.604	0.456
Dll M06479_2.00	Drosophila melanogaster	TAATTDB	VHAATTA	B1H Mathelier et al.(2014) MA0187.1	0.604	0.456
Dll M06217_2.00	Drosophila melanogaster	TAATTDB	VHAATTA	B1H Zhu et al.(2011) Dll_Cell_FBgn0000157	0.604	0.456
Dll M06218_2.00	Drosophila melanogaster	TAATKR	YMATTA	B1H Zhu et al.(2011) Dll_SOLEXA_FBgn0000157	0.604	0.456
DLX3 M09129_2.00	Homo sapiens	RVTAATTRVH	DBYAATTABY	Misc Kulakovskiy et al.(2013) DLX3_HUMAN.H11MO.0.C	0.604	0.456
Dlx3 M09172_2.00	Mus musculus	RVTAATTRVH	DBYAATTABY	Misc Kulakovskiy et al.(2013) DLX3_MOUSE.H11MO.0.C	0.604	0.456
DLX2 M10674_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$DLX2_Q6	0.604	0.456
dlx3.L M10803_2.00	Xenopus laevis	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$DLX3_02	0.604	0.456
DLX3 M10638_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$DLX3_Q3	0.604	0.456
DLX3 M10639_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$DLX3_Q6	0.604	0.456
dlx3.L M10804_2.00	Xenopus laevis	YAWRTAAAYAWWRY	RYWWTRTTTAYWWR	Transfac Matys et al.(2006) V$XFD1_01	0.604	0.456
DLX2 M05027_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX2_eDBD_Methyl-HT-SELEX	0.604	0.456
DLX2 M05029_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX2_FL_Methyl-HT-SELEX	0.604	0.456
DLX3 M04923_2.00	Homo sapiens	NTWAYKHB	VDMRTWAN	SELEX Yin et al.(2017) DLX3_eDBD_Methyl-HT-SELEX_1	0.604	0.456
DLX3 M04924_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX3_eDBD_Methyl-HT-SELEX_2	0.604	0.456
DLX3 M04926_2.00	Homo sapiens	NTWAYGHB	VDCRTWAN	SELEX Yin et al.(2017) DLX3_FL_Methyl-HT-SELEX_1	0.604	0.456
DLX3 M04927_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX3_FL_Methyl-HT-SELEX_2	0.604	0.456
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Myotis_brandtii_Meox2_10031759	Homeodomain	187	243	RKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKR

Links
Other Homeodomain family TFs
Other *Myotis brandtii* TFs

5466 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AGABI2DRAFT_122355	Agaricus bisporus	AGABI2DRAFT_122355	I	0.000
ENSAMEG00000001571	Ailuropoda melanoleuca	ENSAMEG00000001571	I	0.000
AMAG_01902	Allomyces macrogynus	AMAG_01902	N	0.000
AMAG_00381	Allomyces macrogynus	AMAG_00381	N	0.000
M378DRAFT_15741	Amanita muscaria	M378DRAFT_15741	I	0.000
H311_02385	Anncaliia algerae	H311_02385	N	0.000
ISX	Callithrix jacchus	ENSCJAG00000008242	I	0.000
ISX	Canis familiaris	ENSCAFG00000001735	I	0.000
CERSUDRAFT_124570	Ceriporiopsis subvermispora	CERSUDRAFT_124570	I	0.000
ENSCSAG00000008226	Chlorocebus sabaeus	ENSCSAG00000008226	I	0.000
CC1G_07949	Coprinopsis cinerea	CC1G_07949	I	0.000
ENSDORG00000004702	Dipodomys ordii	ENSDORG00000004702	I	0.000
EDEG_00614	Edhazardia aedis	EDEG_00614	N	0.000
CAD25410	Encephalitozoon cuniculi	CAD25410	N	0.000
EHEL_060450	Encephalitozoon hellem	EHEL_060450	N	0.000
Eint_060420	Encephalitozoon intestinalis	Eint_060420	N	0.000
EROM_060430	Encephalitozoon romaleae	EROM_060430	N	0.000
ISX	Equus caballus	ENSECAG00000023597	I	0.000
ISX	Erinaceus europaeus	ENSEEUG00000014207	I	0.000
ISX	Felis catus	ENSFCAG00000013025	I	0.000
GLOTRDRAFT_139953	Gloeophyllum trabeum	GLOTRDRAFT_139953	I	0.000
ISX	Gorilla gorilla	ENSGGOG00000013957	I	0.000
HPLM_0000198901	Haemonchus placei	HPLM_0000198901	I	0.000
ISX	Homo sapiens	ENSG00000175329	D	0.000
HYDPIDRAFT_41913	Hydnomerulius pinastri	HYDPIDRAFT_41913	I	0.000
ENSSTOG00000020661	Ictidomys tridecemlineatus	ENSSTOG00000020661	I	0.000
JAAARDRAFT_499496	Jaapia argillacea	JAAARDRAFT_499496	I	0.000
ISX	Loxodonta africana	ENSLAFG00000001996	I	0.000
ENSP00000311492	Macaca fascicularis	ENSP00000311492	I	0.000
ENSMMUG00000001261	Macaca mulatta	ENSMMUG00000001261	I	0.000
snap_masked-nMf.1.1.scaf16341-processed-gene-0.2	Meloidogyne floridensis	snap_masked-nMf.1.1.scaf16341-processed-gene-0.2	I	0.000
ENSMICG00000016411	Microcebus murinus	ENSMICG00000016411	I	0.000
DI09_14p30	Microsporidia sp	DI09_14p30	I	0.000
E5Q_05501	Mixia osmundae	E5Q_05501	N	0.000
ML03151a	Mnemiopsis leidyi	ML03151a	I	0.640
Moror_1996	Moniliophthora roreri	Moror_1996	I	0.000
Isx	Mus musculus	ENSMUSG00000031621	D	0.000
Myotis_brandtii_ISX_10012874	Myotis brandtii	Myotis_brandtii_ISX_10012874	I	0.000
ISX	Myotis lucifugus	ENSMLUG00000006944	I	0.000
NEPG_01938	Nematocida parisii ertm1	NEPG_01938	N	0.000
NERG_02091	Nematocida sp	NERG_02091	N	0.000
NAPIS_ORF02165	Nosema apis	NAPIS_ORF02165	I	0.000
NBO_278g0001	Nosema bombycis	NBO_278g0001	N	0.000
ISX	Ochotona princeps	ENSOPRG00000015603	I	0.000
ISX	Oryctolagus cuniculus	ENSOCUG00000017205	I	0.000
ISX	Otolemur garnettii	ENSOGAG00000004339	I	0.000
ISX	Pan troglodytes	ENSPTRG00000014295	I	0.000
ENSPANG00000009275	Papio anubis	ENSPANG00000009275	I	0.000
PAXRUDRAFT_24474	Paxillus rubicundulus	PAXRUDRAFT_24474	I	0.000
gw1.2.930.1	Phycomyces blakesleeanus	gw1.2.930.1	I	0.000
PILCRDRAFT_269563	Piloderma croceum	PILCRDRAFT_269563	I	0.000
PIIN_02959	Piriformospora indica	PIIN_02959	I	0.000
M404DRAFT_850536	Pisolithus tinctorius	M404DRAFT_850536	I	0.000
PLEOSDRAFT_163788	Pleurotus ostreatus	PLEOSDRAFT_163788	I	0.000
PLICRDRAFT_179242	Plicaturopsis crispa	PLICRDRAFT_179242	I	0.000
ENSPPYG00000011759	Pongo abelii	ENSPPYG00000011759	I	0.000
PGTG_08516	Puccinia graminis	PGTG_08516	N	0.000
Isx	Rattus norvegicus	ENSRNOG00000039808	I	0.000
RO3G_12689	Rhizopus oryzae	RO3G_12689	I	0.000
RO3G_04843	Rhizopus oryzae	RO3G_04843	I	0.000
RO3G_04153	Rhizopus oryzae	RO3G_04153	I	0.000
RO3G_09595	Rhizopus oryzae	RO3G_09595	I	0.000
Sjc_0062720	Schistosoma japonicum	Sjc_0062720	I	0.000
Smp_090160	Schistosoma mansoni	Smp_090160	I	0.000
SMTD_0001145601	Schistosoma mattheei	SMTD_0001145601	I	0.000
SROB_0001471201	Schistosoma rodhaini	SROB_0001471201	I	0.000
SCHCODRAFT_235408	Schizophyllum commune	SCHCODRAFT_235408	I	0.000
M408DRAFT_287766	Serendipita vermifera	M408DRAFT_287766	I	0.000
SERLA73DRAFT_161532	Serpula lacrymans	SERLA73DRAFT_161532	I	0.000
M422DRAFT_36816	Sphaerobolus stellatus	M422DRAFT_36816	N	0.000
SLOPH_445	Spraguea lophii	SLOPH_445	I	0.000
THOM_1128	Trachipleistophora hominis	THOM_1128	N	0.000
TRE_0001669301	Trichobilharzia regenti	TRE_0001669301	I	0.000
VCUG_01510	Vavraia culicis	VCUG_01510	N	0.000
VICG_01188	Vittaforma corneae	VICG_01188	N	0.000

Myotis_brandtii_Meox2_10031759 (Myotis brandtii) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

5466 Related TFs

Myotis_brandtii_Meox2_10031759 **(Myotis brandtii)
Homeodomain**