cassava43653.valid.m1 (Manihot esculenta)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 cassava43653.valid.m1 T227136_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00 		Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432 		0.668 0.719
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava43653.valid.m1 Homeodomain 31 87

Links

Other Homeodomain family TFs
Other Manihot esculenta TFs

131 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OBART12G09450 Oryza barthii OBART12G09450 N 0.000
OBART12G09480 Oryza barthii OBART12G09480 N 0.000
ORGLA12G0089800 Oryza glaberrima ORGLA12G0089800 N 0.000
ORGLA12G0089600 Oryza glaberrima ORGLA12G0089600 N 0.000
OGLUM12G10680 Oryza glumaepatula OGLUM12G10680 N 0.000
BGIOSGA018453 Oryza indica BGIOSGA018453 N 0.000
BGIOSGA036334 Oryza indica BGIOSGA036334 N 0.000
BGIOSGA006672 Oryza indica BGIOSGA006672 N 0.000
OLONG_012662 Oryza longistaminata OLONG_012662 N 0.000
OLONG_012664 Oryza longistaminata OLONG_012664 N 0.000
OMERI06G17180 Oryza meridionalis OMERI06G17180 N 0.000
ONIVA12G01580 Oryza nivara ONIVA12G01580 N 0.000
ONIVA12G01620 Oryza nivara ONIVA12G01620 N 0.000
OPUNC12G08600 Oryza punctata OPUNC12G08600 N 0.000
OPUNC12G08610 Oryza punctata OPUNC12G08610 N 0.000
OPUNC06G14680 Oryza punctata OPUNC06G14680 N 0.000
ORUFI12G10490 Oryza rufipogon ORUFI12G10490 N 0.000
ORUFI12G10530 Oryza rufipogon ORUFI12G10530 N 0.000
OS12G0407000 Oryza sativa OS12G0407000 N 0.000