Cagra.0882s0002 (Capsella grandiflora)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cagra.0882s0002 T228195_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HAT22
M06926_2.00 		Arabidopsis thaliana
NNYAATCATT
AATGATTRNN		 Dap-seq
OMalley et al.(2016)
HAT22_col_a 		0.861 0.895
HAT2
M06929_2.00 		Arabidopsis thaliana
NHAATGATTRN
NYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT2_colamp_a 		0.792 0.737
HAT2
M06930_2.00 		Arabidopsis thaliana
WNYAATCATWD
HWATGATTRNW		 Dap-seq
OMalley et al.(2016)
HAT2_col_v31 		0.792 0.737
HAT1
M02047_2.00 		Arabidopsis thaliana
NMATGATTRN
NYAATCATKN		 PBM
Weirauch et al.(2014)
pTH8107 		0.790 0.737
HAT1
M06922_2.00 		Arabidopsis thaliana
NHAATGATTRNNWDW
WHWNNYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT1_col_a 		0.790 0.737
HAT1
M06923_2.00 		Arabidopsis thaliana
NYAATCATTDN
NHAATGATTRN		 Dap-seq
OMalley et al.(2016)
HAT1_colamp_a 		0.790 0.737
ATHB-X
M06902_2.00 		Arabidopsis thaliana
HHAATRATTRN
NYAATYATTDD		 Dap-seq
OMalley et al.(2016)
ATHB18_col_a 		0.773 0.702
ATHB-X
M06903_2.00 		Arabidopsis thaliana
NYAATGATTRV
BYAATCATTRN		 Dap-seq
OMalley et al.(2016)
ATHB18_colamp_a 		0.773 0.702
HAT3
M00728_2.00 		Arabidopsis thaliana
DTGATTRV
BYAATCAH		 PBM
Chang et al.(2013)
pTH7400 		0.764 0.789
ATHB-4
M01065_2.00 		Arabidopsis thaliana
NBMTGCATRNN
NNYATGCAKVN		 PBM
Sullivan et al.(2014)
pTH8184 		0.764 0.772
ATHB-4
M02042_2.00 		Arabidopsis thaliana
NNWTNATTRN
NYAATNAWNN		 PBM
Weirauch et al.(2014)
pTH8667 		0.764 0.772
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0882s0002.1.p Homeodomain 108 164

Links

Other Homeodomain family TFs
Other Capsella grandiflora TFs

695 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK12461.1 Cannabis sativa PK12461.1 I 0.000
evm.TU.supercontig_4.138 Carica papaya evm.TU.supercontig_4.138 N 0.000
Cla001517 Citrullus lanatus Cla001517 I 0.000
Cucsa.349370 Cucumis sativus Cucsa.349370 I 0.000
Eucgr.B03537 Eucalyptus grandis Eucgr.B03537 I 0.000
gene06460-v1.0-hybrid Fragaria vesca gene06460-v1.0-hybrid N 0.000
GLYMA18G53954 Glycine max GLYMA18G53954 I 0.000
GLYMA08G47520 Glycine max GLYMA08G47520 I 0.000
Gorai.012G125500 Gossypium raimondii Gorai.012G125500 I 0.000
Gorai.005G195300 Gossypium raimondii Gorai.005G195300 I 0.000
Lus10002581.g Linum usitatissimum Lus10002581.g I 0.000
Lus10001809.g Linum usitatissimum Lus10001809.g I 0.000
chr1.CM0017.80.nc Lotus japonicus chr1.CM0017.80.nc I 0.000
MTR_7g005280 Medicago truncatula MTR_7g005280 I 0.000
POPTR_0012s10530 Populus trichocarpa POPTR_0012s10530 N 0.000
POPTR_0001s13380 Populus trichocarpa POPTR_0001s13380 I 0.000
POPTR_0001s33260 Populus trichocarpa POPTR_0001s33260 N 0.000
POPTR_0003s16490 Populus trichocarpa POPTR_0003s16490 I 0.000
POPTR_0015s11420 Populus trichocarpa POPTR_0015s11420 N 0.000
Pm007070 Prunus mume Pm007070 I 0.000
PRUPE_ppa010222mg Prunus persica PRUPE_ppa010222mg I 0.000
30147.m014441 Ricinus communis 30147.m014441 N 0.000
SapurV1A.0173s0020 Salix purpurea SapurV1A.0173s0020 I 0.000
SapurV1A.1562s0030 Salix purpurea SapurV1A.1562s0030 N 0.000
SapurV1A.1562s0040 Salix purpurea SapurV1A.1562s0040 N 0.000
Solyc01g009860.2 Solanum lycopersicum Solyc01g009860.2 N 0.000
PGSC0003DMG400011891 Solanum tuberosum PGSC0003DMG400011891 N 0.000
TCM_008477 Theobroma cacao TCM_008477 I 0.000
TCM_014713 Theobroma cacao TCM_014713 I 0.000
VIT_17s0000g00770 Vitis vinifera VIT_17s0000g00770 N 0.000