EuGene.0600010372 (Micromonas sp RCC299)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 EuGene.0600010372 T228517_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WOX13
M02049_2.00 		Arabidopsis thaliana
YTGATTGA
TCAATCAR		 PBM
Weirauch et al.(2014)
pTH6461 		0.696 0.491
WOX13
M00866_2.00 		Arabidopsis thaliana
NNTGATTGAN
NTCAATCANN		 PBM
Franco-Zorrilla et al.(2014)
WOX13 		0.696 0.491
GRMZM2G038252
M02137_2.00 		Zea mays
HTRATTGV
BCAATYAD		 PBM
Weirauch et al.(2014)
pTH6141 		0.683 0.474
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
59370 Homeodomain 116 177

Links

Other Homeodomain family TFs
Other Micromonas sp RCC299 TFs

158 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_11596 Aegilops tauschii F775_11596 I 0.696
AMTR_s00044p00155390 Amborella trichopoda AMTR_s00044p00155390 I 0.697
Aquca_007_00901 Aquilegia coerulea Aquca_007_00901 I 0.697
Aquca_015_00333 Aquilegia coerulea Aquca_015_00333 I 0.658
WOX14 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1001881 I 0.686
WOX10 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001761 I 0.688
WOX5 Arabidopsis lyrata fgenesh2_kg.3__1167__AT3G11260.1 I 0.605
HB-4 Arabidopsis lyrata scaffold_700564.1 I 0.696
WOX14 Arabidopsis thaliana AT1G20700 I 0.686
WOX10 Arabidopsis thaliana AT1G20710 I 0.670
WOX5 Arabidopsis thaliana AT3G11260 I 0.605
WOX13 Arabidopsis thaliana AT4G35550 D 0.696
Bostr.19424s1059 Boechera stricta Bostr.19424s1059 I 0.605
Bostr.3717s0001 Boechera stricta Bostr.3717s0001 I 0.686
Bostr.7128s0661 Boechera stricta Bostr.7128s0661 I 0.686
Bostr.7867s1413 Boechera stricta Bostr.7867s1413 I 0.696
BRADI2G53390 Brachypodium distachyon BRADI2G53390 I 0.696
Bo09314s010 Brassica oleracea Bo09314s010 I 0.687
Bo1g006370 Brassica oleracea Bo1g006370 I 0.696
Bo3g155580 Brassica oleracea Bo3g155580 I 0.658
Bo5g030590 Brassica oleracea Bo5g030590 I 0.686
Bo5g136700 Brassica oleracea Bo5g136700 I 0.605
Bo7g061410 Brassica oleracea Bo7g061410 I 0.687
Bo7g117480 Brassica oleracea Bo7g117480 I 0.696
Bra010531 Brassica rapa Bra010531 I 0.658
Bra011623 Brassica rapa Bra011623 I 0.696
Bra012245 Brassica rapa Bra012245 I 0.610
Bra017720 Brassica rapa Bra017720 I 0.697
Bra025839 Brassica rapa Bra025839 I 0.686
PK07880.1 Cannabis sativa PK07880.1 I 0.684
PK14252.1 Cannabis sativa PK14252.1 I 0.683
Cagra.1655s0045 Capsella grandiflora Cagra.1655s0045 I 0.605
Cagra.2350s0096 Capsella grandiflora Cagra.2350s0096 I 0.696
Cagra.6160s0025 Capsella grandiflora Cagra.6160s0025 I 0.686
Cagra.6160s0026 Capsella grandiflora Cagra.6160s0026 I 0.686
Carubv10005217m.g Capsella rubella Carubv10005217m.g I 0.696
Carubv10010349m.g Capsella rubella Carubv10010349m.g I 0.686
Carubv10012447m.g Capsella rubella Carubv10012447m.g I 0.686
Carubv10016169m.g Capsella rubella Carubv10016169m.g I 0.605
evm.TU.supercontig_26.173 Carica papaya evm.TU.supercontig_26.173 I 0.663
evm.TU.supercontig_6.368 Carica papaya evm.TU.supercontig_6.368 I 0.696
Ca_04823 Cicer arietinum Ca_04823 I 0.694
Ca_18623 Cicer arietinum Ca_18623 I 0.694
Ca_19383 Cicer arietinum Ca_19383 I 0.684
Ca_19386 Cicer arietinum Ca_19386 I 0.684
Cla009089 Citrullus lanatus Cla009089 I 0.696
Cla023819 Citrullus lanatus Cla023819 I 0.684
Ciclev10002354m.g Citrus clementina Ciclev10002354m.g I 0.683
Ciclev10026199m.g Citrus clementina Ciclev10026199m.g I 0.696
orange1.1g022516m.g Citrus sinensis orange1.1g022516m.g I 0.696
orange1.1g026809m.g Citrus sinensis orange1.1g026809m.g I 0.683
Cucsa.272210 Cucumis sativus Cucsa.272210 I 0.684
Cucsa.323040 Cucumis sativus Cucsa.323040 I 0.696
Eucgr.I02222 Eucalyptus grandis Eucgr.I02222 I 0.696
Thhalv10008824m.g Eutrema salsugineum Thhalv10008824m.g I 0.674
Thhalv10009917m.g Eutrema salsugineum Thhalv10009917m.g I 0.673
Thhalv10022017m.g Eutrema salsugineum Thhalv10022017m.g I 0.605
Thhalv10025989m.g Eutrema salsugineum Thhalv10025989m.g I 0.697
gene13035-v1.0-hybrid Fragaria vesca gene13035-v1.0-hybrid I 0.696
gene20491-v1.0-hybrid Fragaria vesca gene20491-v1.0-hybrid I 0.708
GLYMA02G10410 Glycine max GLYMA02G10410 I 0.699
GLYMA04G01830 Glycine max GLYMA04G01830 I 0.696
GLYMA06G01940 Glycine max GLYMA06G01940 I 0.696
GLYMA10G43580 Glycine max GLYMA10G43580 I 0.696
GLYMA18G52491 Glycine max GLYMA18G52491 I 0.699
GLYMA20G23220 Glycine max GLYMA20G23220 I 0.696
Gorai.001G199200 Gossypium raimondii Gorai.001G199200 I 0.696
Gorai.003G002200 Gossypium raimondii Gorai.003G002200 I 0.701
Gorai.004G038300 Gossypium raimondii Gorai.004G038300 I 0.690
Gorai.007G372000 Gossypium raimondii Gorai.007G372000 I 0.686
MLOC_56124 Hordeum vulgare MLOC_56124 I 0.696
LPERR01G30370 Leersia perrieri LPERR01G30370 I 0.696
Lus10016026.g Linum usitatissimum Lus10016026.g I 0.692
Lus10023561.g Linum usitatissimum Lus10023561.g I 0.684
Lus10040447.g Linum usitatissimum Lus10040447.g I 0.696
chr1.CM0113.620.nc Lotus japonicus chr1.CM0113.620.nc I 0.694
chr5.CM0180.70.nc Lotus japonicus chr5.CM0180.70.nc I 0.689
LjT41B11.90.nd Lotus japonicus LjT41B11.90.nd I 0.688
MDP0000224466 Malus domestica MDP0000224466 I 0.691
MDP0000304650 Malus domestica MDP0000304650 I 0.699
MDP0000316517 Malus domestica MDP0000316517 I 0.696
MDP0000851699 Malus domestica MDP0000851699 I 0.691
cassava23423.valid.m1 Manihot esculenta cassava23423.valid.m1 I 0.696
cassava39214.m1 Manihot esculenta cassava39214.m1 I 0.668
MTR_1g115315 Medicago truncatula MTR_1g115315 I 0.694
MTR_3g115620 Medicago truncatula MTR_3g115620 I 0.696
MTR_7g023810 Medicago truncatula MTR_7g023810 I 0.684
estExt_fgenesh1_pg.C_90244 Micromonas pusilla estExt_fgenesh1_pg.C_90244 I 0.740
mgf006573m Mimulus guttatus mgf006573m I 0.696
GSMUA_Achr10G07260_001 Musa acuminata GSMUA_Achr10G07260_001 I 0.683
GSMUA_Achr1G17980_001 Musa acuminata GSMUA_Achr1G17980_001 I 0.696
GSMUA_Achr3G14840_001 Musa acuminata GSMUA_Achr3G14840_001 I 0.656
GSMUA_Achr4G25530_001 Musa acuminata GSMUA_Achr4G25530_001 I 0.696
GSMUA_Achr4G29470_001 Musa acuminata GSMUA_Achr4G29470_001 I 0.675
GSMUA_Achr5G11080_001 Musa acuminata GSMUA_Achr5G11080_001 I 0.694
GSMUA_Achr7G04050_001 Musa acuminata GSMUA_Achr7G04050_001 I 0.711
GSMUA_AchrUn_randomG18610_001 Musa acuminata GSMUA_AchrUn_randomG18610_001 I 0.696
OBART01G35170 Oryza barthii OBART01G35170 I 0.696
OB01G44030 Oryza brachyantha OB01G44030 I 0.696
ORGLA01G0290300 Oryza glaberrima ORGLA01G0290300 I 0.696
BGIOSGA004695 Oryza indica BGIOSGA004695 I 0.696
OLONG_016784 Oryza longistaminata OLONG_016784 I 0.696
OMERI01G32310 Oryza meridionalis OMERI01G32310 I 0.696
ONIVA01G40180 Oryza nivara ONIVA01G40180 I 0.696
OPUNC01G34140 Oryza punctata OPUNC01G34140 I 0.696
ORUFI01G38500 Oryza rufipogon ORUFI01G38500 I 0.696
WOX8 Oryza sativa OS01G0818400 I 0.696
OSTLU_27102 Ostreococcus lucimarinus OSTLU_27102 N 0.627
gw1.13.333.1 Ostreococcus RCC809 gw1.13.333.1 N 0.608
1300010135 Ostreococcus tauri 1300010135 N 0.655
Pavir.Ea03245 Panicum virgatum Pavir.Ea03245 I 0.683
Pavir.Eb03552 Panicum virgatum Pavir.Eb03552 I 0.683
PDK_20s1408301g001 Phoenix dactylifera PDK_20s1408301g001 I 0.691
fgenesh1_pg.scaffold_217000007 Physcomitrella patens fgenesh1_pg.scaffold_217000007 I 0.678
gw1.224.39.1 Physcomitrella patens gw1.224.39.1 I 0.696
gw1.29.10.1 Physcomitrella patens gw1.29.10.1 I 0.696
POPTR_0002s00980 Populus trichocarpa POPTR_0002s00980 I 0.691
HB-4 Populus trichocarpa POPTR_0005s10480 I 0.696
POPTR_0005s27410 Populus trichocarpa POPTR_0005s27410 I 0.691
WOX1 Populus trichocarpa POPTR_0010s12150 I 0.634
Pm022951 Prunus mume Pm022951 I 0.696
Pm026793 Prunus mume Pm026793 I 0.696
PRUPE_ppa011225mg Prunus persica PRUPE_ppa011225mg I 0.696
PRUPE_ppa021400mg Prunus persica PRUPE_ppa021400mg I 0.696
29830.m001452 Ricinus communis 29830.m001452 I 0.696
30170.m014389 Ricinus communis 30170.m014389 I 0.670
SapurV1A.0016s0590 Salix purpurea SapurV1A.0016s0590 I 0.691
SapurV1A.0266s0300 Salix purpurea SapurV1A.0266s0300 I 0.691
SapurV1A.0351s0200 Salix purpurea SapurV1A.0351s0200 I 0.644
SapurV1A.1240s0080 Salix purpurea SapurV1A.1240s0080 I 0.696
SapurV1A.2168s0010 Salix purpurea SapurV1A.2168s0010 I 0.644
SELMODRAFT_404178 Selaginella moellendorffii SELMODRAFT_404178 I 0.696
SELMODRAFT_407157 Selaginella moellendorffii SELMODRAFT_407157 I 0.696
SELMODRAFT_438787 Selaginella moellendorffii SELMODRAFT_438787 I 0.668
SELMODRAFT_451353 Selaginella moellendorffii SELMODRAFT_451353 I 0.661
SELMODRAFT_451355 Selaginella moellendorffii SELMODRAFT_451355 I 0.668
SELMODRAFT_84885 Selaginella moellendorffii SELMODRAFT_84885 I 0.660
Si002508m.g Setaria italica Si002508m.g I 0.683
Solyc02g082670.2 Solanum lycopersicum Solyc02g082670.2 I 0.696
Solyc11g072790.1 Solanum lycopersicum Solyc11g072790.1 I 0.612
PGSC0003DMG400001565 Solanum tuberosum PGSC0003DMG400001565 I 0.696
Sb03g038080 Sorghum bicolor Sb03g038080 I 0.683
TCM_000062 Theobroma cacao TCM_000062 I 0.696
TCM_034409 Theobroma cacao TCM_034409 I 0.688
Traes_3AL_D0053C177 Triticum aestivum Traes_3AL_D0053C177 I 0.696
Traes_3AS_9079D6B71 Triticum aestivum Traes_3AS_9079D6B71 I 0.696
TRAES3BF057600060CFD_g Triticum aestivum TRAES3BF057600060CFD_g I 0.696
TRAES3BF091200090CFD_g Triticum aestivum TRAES3BF091200090CFD_g I 0.696
TRAES3BF091200100CFD_g Triticum aestivum TRAES3BF091200100CFD_g I 0.696
Traes_3DL_6B1815F7D Triticum aestivum Traes_3DL_6B1815F7D I 0.696
Traes_3DS_97BBFFA03 Triticum aestivum Traes_3DS_97BBFFA03 I 0.696
TRIUR3_23636 Triticum urartu TRIUR3_23636 I 0.696
VIT_04s0044g00150 Vitis vinifera VIT_04s0044g00150 I 0.684
VIT_04s0044g00160 Vitis vinifera VIT_04s0044g00160 I 0.627
VIT_18s0122g01140 Vitis vinifera VIT_18s0122g01140 I 0.696
GRMZM2G038252 Zea mays GRMZM2G038252 D 0.683
GRMZM2G069274 Zea mays GRMZM2G069274 I 0.683
GRMZM5G805026 Zea mays GRMZM5G805026 I 0.683