MDP0000599531 (Malus domestica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 MDP0000599531 T229097_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KNAT7
M01064_2.00 		Arabidopsis thaliana
TGACRKST
ASMYGTCA		 PBM
Sullivan et al.(2014)
pTH9798 		0.731 0.600
KNAT4
M01238_2.00 		Arabidopsis thaliana
NNGACNNNN
NNNNGTCNN		 PBM
Lambert et al.(2019)
pTH9968 		0.731 0.600
KNAT3
M02051_2.00 		Arabidopsis thaliana
NNNGACVBNN
NNVBGTCNNN		 PBM
Weirauch et al.(2014)
pTH7600 		0.731 0.580
HOS66
M02156_2.00 		Oryza sativa
NNNNDHNN
NNDHNNNN		 PBM
Weirauch et al.(2014)
pTH8332 		0.718 0.620
PK25034.1
M01254_2.00 		Cannabis sativa
NNTGACRKBN
NVMYGTCANN		 PBM
Lambert et al.(2019)
pTH11259 		0.715 0.960
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.646 0.480
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.642 0.440
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.642 0.440
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.642 0.440
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.642 0.440
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.607 0.440
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000599531 Homeodomain 309 361

Links

Other Homeodomain family TFs
Other Malus domestica TFs

1226 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.25993s0227 Boechera stricta Bostr.25993s0227 I 0.000
Bo4g195580 Brassica oleracea Bo4g195580 I 0.000
Bra039334 Brassica rapa Bra039334 I 0.000
PK07653.1 Cannabis sativa PK07653.1 I 0.000
Cagra.0698s0014 Capsella grandiflora Cagra.0698s0014 I 0.000
Carubv10023501m.g Capsella rubella Carubv10023501m.g I 0.000
Ca_19588 Cicer arietinum Ca_19588 I 0.000
Cla021612 Citrullus lanatus Cla021612 N 0.000
Cucsa.257800 Cucumis sativus Cucsa.257800 N 0.000
GLYMA01G34650 Glycine max GLYMA01G34650 N 0.000
GLYMA03G02500 Glycine max GLYMA03G02500 N 0.000
Gorai.007G092400 Gossypium raimondii Gorai.007G092400 N 0.000
MDP0000204597 Malus domestica MDP0000204597 N 0.000
cassava28657.m1 Manihot esculenta cassava28657.m1 I 0.000
cassava36905.valid.m1 Manihot esculenta cassava36905.valid.m1 N 0.000
POPTR_0014s06750 Populus trichocarpa POPTR_0014s06750 I 0.000
Pm017948 Prunus mume Pm017948 N 0.000
PRUPE_ppa021277mg Prunus persica PRUPE_ppa021277mg N 0.000
30174.m008910 Ricinus communis 30174.m008910 N 0.000
SapurV1A.0532s0070 Salix purpurea SapurV1A.0532s0070 N 0.000
Solyc01g091540.1 Solanum lycopersicum Solyc01g091540.1 N 0.000
TCM_005483 Theobroma cacao TCM_005483 I 0.000
AtGRF9 Vitis vinifera VIT_15s0048g01740 I 0.000