MDP0000804580 (Malus domestica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 MDP0000804580 T229116_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZHD7
M02155_2.00 		Oryza sativa
NNWAANNNNN
NNNNNTTWNN		 PBM
Weirauch et al.(2014)
pTH6076 		0.639 0.579
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000804580 Homeodomain 248 308

Links

Other Homeodomain family TFs
Other Malus domestica TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10028391m.g Capsella rubella Carubv10028391m.g I 0.628
Ca_12172 Cicer arietinum Ca_12172 I 0.676
Ca_02034 Cicer arietinum Ca_02034 I 0.836
Ciclev10027184m.g Citrus clementina Ciclev10027184m.g I 0.783
Eucgr.I00022 Eucalyptus grandis Eucgr.I00022 I 0.645
gene14755-v1.0-hybrid Fragaria vesca gene14755-v1.0-hybrid I 0.839
GLYMA20G35690 Glycine max GLYMA20G35690 I 0.685
Gorai.012G046200 Gossypium raimondii Gorai.012G046200 I 0.761
MLOC_18998 Hordeum vulgare MLOC_18998 I 0.644
LPERR02G24020 Leersia perrieri LPERR02G24020 I 0.639
Lus10015900.g Linum usitatissimum Lus10015900.g I 0.665
cassava39895.m1 Manihot esculenta cassava39895.m1 I 0.663
mgf026503m Mimulus guttatus mgf026503m I 0.677
mgf024641m Mimulus guttatus mgf024641m I 0.689
OGLUM02G30190 Oryza glumaepatula OGLUM02G30190 I 0.639
OMERI02G28440 Oryza meridionalis OMERI02G28440 I 0.639
OPUNC02G27120 Oryza punctata OPUNC02G27120 I 0.639
Q0DYA2_ORYSJ Oryza sativa Q0DYA2_ORYSJ I 0.639
ZHD7 Oryza sativa OS02G0706600 D 0.639
Pavir.Ab02855 Panicum virgatum Pavir.Ab02855 I 0.638
Pavir.Aa00802 Panicum virgatum Pavir.Aa00802 I 0.638
POPTR_0004s14270 Populus trichocarpa POPTR_0004s14270 I 0.680
PRUPE_ppa020272mg Prunus persica PRUPE_ppa020272mg I 0.856
29983.m003297 Ricinus communis 29983.m003297 I 0.675
SapurV1A.0185s0100 Salix purpurea SapurV1A.0185s0100 I 0.680
SELMODRAFT_59936 Selaginella moellendorffii SELMODRAFT_59936 I 0.641
SELMODRAFT_49899 Selaginella moellendorffii SELMODRAFT_49899 I 0.641
Si020227m.g Setaria italica Si020227m.g I 0.639
Sb04g030480 Sorghum bicolor Sb04g030480 I 0.638
TCM_001660 Theobroma cacao TCM_001660 I 0.783
GRMZM2G069365 Zea mays GRMZM2G069365 I 0.638