SROB_0001564301 (Schistosoma rodhaini)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SROB_0001564301 T236420_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HESX1
M03187_2.00 		Homo sapiens
NHTAATTRVH
DBYAATTADN		 SELEX
Jolma et al.(2013)
HESX1_1 		0.631 0.275
HESX1
M03188_2.00 		Homo sapiens
NTAATTRGYAATTAD
HTAATTRCYAATTAN		 SELEX
Jolma et al.(2013)
HESX1_2 		0.631 0.275
HESX1
M05227_2.00 		Homo sapiens
DYAATTRV
BYAATTRH		 SELEX
Yin et al.(2017)
HESX1_FL_HT-SELEX 		0.631 0.275
HESX1
M05228_2.00 		Homo sapiens
NYAATTRD
HYAATTRN		 SELEX
Yin et al.(2017)
HESX1_FL_Methyl-HT-SELEX 		0.631 0.275
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SROB_0001564301-mRNA-1 Homeodomain 377 405
SROB_0001564301-mRNA-1 Homeodomain 398 420

Links

Other Homeodomain family TFs
Other Schistosoma rodhaini TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_12975 Aegilops tauschii F775_12975 N
AMTR_s00002p00268140 Amborella trichopoda AMTR_s00002p00268140 I
Aquca_003_00556 Aquilegia coerulea Aquca_003_00556 I
Aquca_006_00040 Aquilegia coerulea Aquca_006_00040 I
Aquca_006_00360 Aquilegia coerulea Aquca_006_00360 I
Aquca_022_00003 Aquilegia coerulea Aquca_022_00003 I
AtbZIP3 Arabidopsis lyrata fgenesh2_kg.6__1562__AT5G15830.1 I
ATBZIP42 Arabidopsis thaliana AT3G30530 D
Bostr.2902s0318 Boechera stricta Bostr.2902s0318 I
BRADI3G02980 Brachypodium distachyon BRADI3G02980 N
Bo2g012800 Brassica oleracea Bo2g012800 I
Bo9g163740 Brassica oleracea Bo9g163740 I
Bra008670 Brassica rapa Bra008670 I
Bra010010 Brassica rapa Bra010010 I
Bra023540 Brassica rapa Bra023540 I
PK07533.1 Cannabis sativa PK07533.1 I
Cagra.6845s0027 Capsella grandiflora Cagra.6845s0027 I
Carubv10002068m.g Capsella rubella Carubv10002068m.g I
evm.TU.supercontig_129.74 Carica papaya evm.TU.supercontig_129.74 I
evm.TU.supercontig_538.1 Carica papaya evm.TU.supercontig_538.1 I
Ca_09362 Cicer arietinum Ca_09362 I
Ca_15971 Cicer arietinum Ca_15971 N
Cla005975 Citrullus lanatus Cla005975 I
Cla015037 Citrullus lanatus Cla015037 I
Cla016748 Citrullus lanatus Cla016748 I
Cla016841 Citrullus lanatus Cla016841 I
Cla020641 Citrullus lanatus Cla020641 I
Ciclev10027584m.g Citrus clementina Ciclev10027584m.g I
Ciclev10029834m.g Citrus clementina Ciclev10029834m.g I
Ciclev10032777m.g Citrus clementina Ciclev10032777m.g I
orange1.1g029952m.g Citrus sinensis orange1.1g029952m.g I
orange1.1g043159m.g Citrus sinensis orange1.1g043159m.g I
orange1.1g044691m.g Citrus sinensis orange1.1g044691m.g I
Cucsa.174700 Cucumis sativus Cucsa.174700 I
Cucsa.238410 Cucumis sativus Cucsa.238410 I
Cucsa.284240 Cucumis sativus Cucsa.284240 I
Cucsa.388800 Cucumis sativus Cucsa.388800 I
Eucgr.H02330 Eucalyptus grandis Eucgr.H02330 I
Eucgr.I02090 Eucalyptus grandis Eucgr.I02090 I
Thhalv10015835m.g Eutrema salsugineum Thhalv10015835m.g I
gene04504-v1.0-hybrid Fragaria vesca gene04504-v1.0-hybrid I
gene08757-v1.0-hybrid Fragaria vesca gene08757-v1.0-hybrid I
gene21832-v1.0-hybrid Fragaria vesca gene21832-v1.0-hybrid I
GLYMA01G09510 Glycine max GLYMA01G09510 I
GLYMA01G40370 Glycine max GLYMA01G40370 I
GLYMA02G13960 Glycine max GLYMA02G13960 I
GLYMA11G04920 Glycine max GLYMA11G04920 I
GLYMA11G12240 Glycine max GLYMA11G12240 I
GLYMA12G04440 Glycine max GLYMA12G04440 I
GLYMA17G17100 Glycine max GLYMA17G17100 I
GLYMA19G05050 Glycine max GLYMA19G05050 I
Gorai.001G251000 Gossypium raimondii Gorai.001G251000 I
Gorai.003G032100 Gossypium raimondii Gorai.003G032100 I
MLOC_63436 Hordeum vulgare MLOC_63436 N
LPERR02G04950 Leersia perrieri LPERR02G04950 I
LPERR12G15130 Leersia perrieri LPERR12G15130 I
Lus10011722.g Linum usitatissimum Lus10011722.g I
Lus10013059.g Linum usitatissimum Lus10013059.g I
Lus10029101.g Linum usitatissimum Lus10029101.g I
chr2.CM0021.50.nd Lotus japonicus chr2.CM0021.50.nd I
chr2.CM0124.640.nd Lotus japonicus chr2.CM0124.640.nd I
MDP0000183562 Malus domestica MDP0000183562 I
MDP0000239026 Malus domestica MDP0000239026 I
MDP0000863909 Malus domestica MDP0000863909 I
MDP0000891108 Malus domestica MDP0000891108 I
cassava24775.valid.m1 Manihot esculenta cassava24775.valid.m1 I
cassava32522.m1 Manihot esculenta cassava32522.m1 I
cassava35454.valid.m1 Manihot esculenta cassava35454.valid.m1 I
cassava41140.m1 Manihot esculenta cassava41140.m1 I
cassava46237.m1 Manihot esculenta cassava46237.m1 I
cassava9577.m1 Manihot esculenta cassava9577.m1 I
MTR_4g097440 Medicago truncatula MTR_4g097440 I
MTR_5g015090 Medicago truncatula MTR_5g015090 I
MTR_7g029400 Medicago truncatula MTR_7g029400 I
mgf003466m Mimulus guttatus mgf003466m I
mgf007535m Mimulus guttatus mgf007535m I
mgf013074m Mimulus guttatus mgf013074m I
mgf017392m Mimulus guttatus mgf017392m I
GSMUA_Achr10G08670_001 Musa acuminata GSMUA_Achr10G08670_001 I
GSMUA_Achr10G12910_001 Musa acuminata GSMUA_Achr10G12910_001 I
GSMUA_Achr11G05140_001 Musa acuminata GSMUA_Achr11G05140_001 I
GSMUA_Achr1G12710_001 Musa acuminata GSMUA_Achr1G12710_001 I
GSMUA_Achr1G25340_001 Musa acuminata GSMUA_Achr1G25340_001 I
GSMUA_Achr2G06540_001 Musa acuminata GSMUA_Achr2G06540_001 I
GSMUA_Achr5G05350_001 Musa acuminata GSMUA_Achr5G05350_001 I
OBART02G02570 Oryza barthii OBART02G02570 N
OBART02G05680 Oryza barthii OBART02G05680 I
OBART02G11580 Oryza barthii OBART02G11580 I
OBART02G31030 Oryza barthii OBART02G31030 I
ORGLA02G0024700 Oryza glaberrima ORGLA02G0024700 N
ORGLA02G0052000 Oryza glaberrima ORGLA02G0052000 I
ORGLA02G0104200 Oryza glaberrima ORGLA02G0104200 I
ORGLA02G0265300 Oryza glaberrima ORGLA02G0265300 I
OGLUM02G02590 Oryza glumaepatula OGLUM02G02590 N
OGLUM02G05620 Oryza glumaepatula OGLUM02G05620 I
OGLUM02G11500 Oryza glumaepatula OGLUM02G11500 I
OGLUM02G31690 Oryza glumaepatula OGLUM02G31690 I
BGIOSGA006734 Oryza indica BGIOSGA006734 I
BGIOSGA007184 Oryza indica BGIOSGA007184 N
BGIOSGA007649 Oryza indica BGIOSGA007649 I
BGIOSGA008968 Oryza indica BGIOSGA008968 I
OLONG_004835 Oryza longistaminata OLONG_004835 I
OMERI02G06470 Oryza meridionalis OMERI02G06470 I
OMERI02G12230 Oryza meridionalis OMERI02G12230 I
OMERI02G29910 Oryza meridionalis OMERI02G29910 I
ONIVA02G02510 Oryza nivara ONIVA02G02510 N
ONIVA02G06040 Oryza nivara ONIVA02G06040 I
ONIVA02G12920 Oryza nivara ONIVA02G12920 I
ONIVA02G34180 Oryza nivara ONIVA02G34180 I
OPUNC02G02000 Oryza punctata OPUNC02G02000 N
OPUNC02G10230 Oryza punctata OPUNC02G10230 I
OPUNC02G28720 Oryza punctata OPUNC02G28720 I
OPUNC12G16360 Oryza punctata OPUNC12G16360 I
ORUFI02G02580 Oryza rufipogon ORUFI02G02580 N
ORUFI02G05790 Oryza rufipogon ORUFI02G05790 I
ORUFI02G11610 Oryza rufipogon ORUFI02G11610 I
ORUFI02G32700 Oryza rufipogon ORUFI02G32700 I
OS02G0132500 Oryza sativa OS02G0132500 N
OS02G0175100 Oryza sativa OS02G0175100 I
OS02G0266800 Oryza sativa OS02G0266800 D
OS02G0728001 Oryza sativa OS02G0728001 D
Pavir.Aa03364 Panicum virgatum Pavir.Aa03364 I
Pavir.Ab00505 Panicum virgatum Pavir.Ab00505 I
PDK_20s1417191g003 Phoenix dactylifera PDK_20s1417191g003 I
POPTR_0004s16560 Populus trichocarpa POPTR_0004s16560 I
POPTR_0007s14740 Populus trichocarpa POPTR_0007s14740 I
POPTR_0008s11260 Populus trichocarpa POPTR_0008s11260 I
POPTR_0009s12250 Populus trichocarpa POPTR_0009s12250 I
POPTR_0010s14530 Populus trichocarpa POPTR_0010s14530 I
Pm002353 Prunus mume Pm002353 I
Pm015434 Prunus mume Pm015434 I
PRUPE_ppa011366mg Prunus persica PRUPE_ppa011366mg I
PRUPE_ppa011589mg Prunus persica PRUPE_ppa011589mg I
PRUPE_ppa011644mg Prunus persica PRUPE_ppa011644mg I
30131.m007078 Ricinus communis 30131.m007078 I
30138.m003866 Ricinus communis 30138.m003866 I
SapurV1A.0060s0610 Salix purpurea SapurV1A.0060s0610 I
SapurV1A.0084s0340 Salix purpurea SapurV1A.0084s0340 I
SELMODRAFT_17884 Selaginella moellendorffii SELMODRAFT_17884 I
SELMODRAFT_17886 Selaginella moellendorffii SELMODRAFT_17886 I
Si017778m.g Setaria italica Si017778m.g I
Solyc04g005170.1 Solanum lycopersicum Solyc04g005170.1 I
PGSC0003DMG400001916 Solanum tuberosum PGSC0003DMG400001916 I
PGSC0003DMG400007523 Solanum tuberosum PGSC0003DMG400007523 I
PGSC0003DMG400030946 Solanum tuberosum PGSC0003DMG400030946 I
Sb04g002700 Sorghum bicolor Sb04g002700 N
Sb04g005020 Sorghum bicolor Sb04g005020 I
TCM_000835 Theobroma cacao TCM_000835 I
Traes_6AS_FDF16F4EA Triticum aestivum Traes_6AS_FDF16F4EA N
VIT_01s0010g00930 Vitis vinifera VIT_01s0010g00930 I
VIT_03s0038g04450 Vitis vinifera VIT_03s0038g04450 I
VIT_05s0077g01140 Vitis vinifera VIT_05s0077g01140 I
GRMZM2G098904 Zea mays GRMZM2G098904 I
GRMZM2G444748 Zea mays GRMZM2G444748 N