Bra023584 (Brassica rapa)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00447 (HSF_DNA-bind) IPR000232 Bra023584 T239861_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HSFA1B
M06948_2.00 		Arabidopsis thaliana
GAANNTTCTAGA
TCTAGAANNTTC		 Dap-seq
OMalley et al.(2016)
HSF3_col_a 		0.533 0.920
HSFA1B
M06949_2.00 		Arabidopsis thaliana
TTCYRG
CYRGAA		 Dap-seq
OMalley et al.(2016)
HSF3_colamp_a 		0.533 0.920
HSFA1E
M06939_2.00 		Arabidopsis thaliana
RGAANNTTCTAGA
TCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSFA1E_col_a 		0.524 0.885
HSFA1E
M06940_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFA1E_colamp_a 		0.524 0.885
HSFA6B
M06941_2.00 		Arabidopsis thaliana
RGAASNTTCTAGA
TCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFA6B_colamp_a 		0.457 0.759
HSFA6B
M06942_2.00 		Arabidopsis thaliana
RGAABNTTCTRGAAN
NTTCYAGAANVTTCY		 Dap-seq
OMalley et al.(2016)
HSFA6B_col 		0.457 0.759
HSFA4A
M06947_2.00 		Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN		 Dap-seq
OMalley et al.(2016)
HSF21_col_a 		0.456 0.724
HSFA6A
M06950_2.00 		Arabidopsis thaliana
GAASNTTCTAGAANNW
WNNTTCTAGAANSTTC		 Dap-seq
OMalley et al.(2016)
HSFA6A_col_a 		0.396 0.655
HSFA6A
M06951_2.00 		Arabidopsis thaliana
GAASNTTCTAGAA
TTCTAGAANSTTC		 Dap-seq
OMalley et al.(2016)
HSFA6A_colamp_a 		0.396 0.655
HSFB4
M06936_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFB4_col_a 		0.389 0.667
HSFB2A
M00869_2.00 		Arabidopsis thaliana
NNNNNTTCB
VGAANNNNN		 PBM
Franco-Zorrilla et al.(2014)
HSFB2A 		0.374 0.632
HSFB2A
M06952_2.00 		Arabidopsis thaliana
GAANNTTCYAGA
TCTRGAANNTTC		 Dap-seq
OMalley et al.(2016)
HSF6_col_a 		0.374 0.632
HSFB2B
M06945_2.00 		Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSF7_col_a 		0.361 0.632
HSFB2B
M06946_2.00 		Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSF7_colamp_a 		0.361 0.632
HSFC1
M00868_2.00 		Arabidopsis thaliana
NDTCBNNN
NNNVGAHN		 PBM
Franco-Zorrilla et al.(2014)
HSFC1 		0.343 0.655
HSFC1
M06943_2.00 		Arabidopsis thaliana
GAASNTTCTAG
CTAGAANSTTC		 Dap-seq
OMalley et al.(2016)
HSFC1_col_a 		0.343 0.655
HSFC1
M06944_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAANVW
WBNTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFC1_colamp_a 		0.343 0.655
HSFB3
M06937_2.00 		Arabidopsis thaliana
RRAANMWTCTAGAAV
BTTCTAGAWKNTTYY		 Dap-seq
OMalley et al.(2016)
HSFB3_col_a 		0.334 0.575
HSFB3
M06938_2.00 		Arabidopsis thaliana
AABSTTCTAGAAN
NTTCTAGAASVTT		 Dap-seq
OMalley et al.(2016)
HSFB3_colamp_a 		0.334 0.575
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra023584.1-P HSF 27 117

Links

Other HSF family TFs
Other Brassica rapa TFs

1392 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
FUS3 Arabidopsis thaliana AT3G26790 D
Bostr.0556s0351 Boechera stricta Bostr.0556s0351 I
Bo00285s530 Brassica oleracea Bo00285s530 I
Bo7g083910 Brassica oleracea Bo7g083910 I
Bra032953 Brassica rapa Bra032953 I
Cagra.1841s0002 Capsella grandiflora Cagra.1841s0002 I
Carubv10019353m.g Capsella rubella Carubv10019353m.g I
evm.TU.supercontig_70.84 Carica papaya evm.TU.supercontig_70.84 I
Ca_05976 Cicer arietinum Ca_05976 I
Cla009252 Citrullus lanatus Cla009252 I
Ciclev10016085m.g Citrus clementina Ciclev10016085m.g I
orange1.1g041864m.g Citrus sinensis orange1.1g041864m.g I
Thhalv10005481m.g Eutrema salsugineum Thhalv10005481m.g I
GLYMA16G05480 Glycine max GLYMA16G05480 I
GLYMA19G27336 Glycine max GLYMA19G27336 I
Gorai.001G273500 Gossypium raimondii Gorai.001G273500 I
Lus10041521.g Linum usitatissimum Lus10041521.g I
Lus10012572.g Linum usitatissimum Lus10012572.g I
LjSGA_037319.1 Lotus japonicus LjSGA_037319.1 I
MDP0000268649 Malus domestica MDP0000268649 I
cassava14836.m1 Manihot esculenta cassava14836.m1 I
cassava11393.m1 Manihot esculenta cassava11393.m1 I
MTR_7g083700 Medicago truncatula MTR_7g083700 I
POPTR_0017s08820 Populus trichocarpa POPTR_0017s08820 I
POPTR_0001s32990 Populus trichocarpa POPTR_0001s32990 I
Pm016099 Prunus mume Pm016099 I
PRUPE_ppa021307mg Prunus persica PRUPE_ppa021307mg I
30131.m006860 Ricinus communis 30131.m006860 I
TCM_017321 Theobroma cacao TCM_017321 I
FUS3 Vitis vinifera VIT_14s0068g01290 I