Gorai.001G273500 (Gossypium raimondii)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Gorai.001G273500 T023292_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FUS3
M06706_2.00 		Arabidopsis thaliana
WNHWTGCATGYDHDW
WHDHRCATGCAWDNW		 Dap-seq
OMalley et al.(2016)
FUS3_col_a 		0.847 0.847
FUS3
M09773_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FUS3_Q2 		0.847 0.847
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.001G273500.1 B3 118 220
Gorai.001G273500.2 B3 118 220
Gorai.001G273500.3 B3 36 138

Links

Other B3 family TFs
Other Gossypium raimondii TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_017321 Theobroma cacao TCM_017321 I 0.980
Pm016099 Prunus mume Pm016099 I 0.929
PRUPE_ppa021307mg Prunus persica PRUPE_ppa021307mg I 0.908
30131.m006860 Ricinus communis 30131.m006860 I 0.908
Ciclev10016085m.g Citrus clementina Ciclev10016085m.g I 0.908
orange1.1g041864m.g Citrus sinensis orange1.1g041864m.g I 0.898
MTR_7g083700 Medicago truncatula MTR_7g083700 I 0.888
Ca_05976 Cicer arietinum Ca_05976 I 0.888
GLYMA19G27336 Glycine max GLYMA19G27336 I 0.878
POPTR_0017s08820 Populus trichocarpa POPTR_0017s08820 I 0.878
GLYMA16G05480 Glycine max GLYMA16G05480 I 0.867
Cla009252 Citrullus lanatus Cla009252 I 0.857
cassava11393.m1 Manihot esculenta cassava11393.m1 I 0.857
FUS3 Arabidopsis thaliana AT3G26790 D 0.847
Bostr.0556s0351 Boechera stricta Bostr.0556s0351 I 0.847
Thhalv10005481m.g Eutrema salsugineum Thhalv10005481m.g I 0.847
Bo00285s530 Brassica oleracea Bo00285s530 I 0.837
Bra032953 Brassica rapa Bra032953 I 0.837
FUS3 Arabidopsis lyrata fgenesh2_kg.5__447__AT3G26790.1 I 0.837
POPTR_0001s32990 Populus trichocarpa POPTR_0001s32990 I 0.837
Cagra.1841s0002 Capsella grandiflora Cagra.1841s0002 I 0.827
Carubv10019353m.g Capsella rubella Carubv10019353m.g I 0.827
Lus10012572.g Linum usitatissimum Lus10012572.g I 0.816
Lus10041521.g Linum usitatissimum Lus10041521.g I 0.806
cassava14836.m1 Manihot esculenta cassava14836.m1 I 0.786
FUS3 Vitis vinifera VIT_14s0068g01290 I 0.758
Bo7g083910 Brassica oleracea Bo7g083910 I 0.745
evm.TU.supercontig_70.84 Carica papaya evm.TU.supercontig_70.84 I 0.714