ENSPFOG00000014077 (Poecilia formosa)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00605 (IRF) IPR001346 ENSPFOG00000014077 T244324_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF6
M02253_2.00 		Gallus gallus
NNMCNAAWNN
NNWTTNGKNN		 PBM
Weirauch et al.(2014)
pTH9178 		0.817 0.817
IRF6
M02254_2.00 		Meleagris gallopavo
NRNCGAWACY
RGTWTCGNYN		 PBM
Weirauch et al.(2014)
pTH9210 		0.808 0.808
irf6.2
M02259_2.00 		Xenopus tropicalis
NVNHGAWACH
DGTWTCDNBN		 PBM
Weirauch et al.(2014)
pTH9302 		0.798 0.798
Irf6
M00176_2.00 		Mus musculus
NNNHGADASN
NSTHTCDNNN		 PBM
Badis et al.(2009)
Irf6_3803 		0.769 0.769
IRF6
M05527_2.00 		Homo sapiens
RGTWTCGNNNNNNYGAWACY
RGTWTCRNNNNNNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_HT-SELEX 		0.769 0.769
IRF6
M05529_2.00 		Homo sapiens
ACCGAAACT
AGTTTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_HT-SELEX 		0.769 0.769
IRF6
M05528_2.00 		Homo sapiens
RGTWTCGNHNNDNYGAWACY
RGTWTCRNHNNDNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_Methyl-HT-SELEX 		0.769 0.769
IRF6
M05530_2.00 		Homo sapiens
ACCGAWACY
RGTWTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_Methyl-HT-SELEX 		0.769 0.769
irf5.L
M02260_2.00 		Xenopus laevis
VNCGADACHN
NDGTHTCGNB		 PBM
Weirauch et al.(2014)
pTH9367 		0.712 0.712
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPFOP00000014123 IRF 30 133
ENSPFOP00000030875 IRF 9 114

Links

Other IRF family TFs
Other Poecilia formosa TFs

89 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
scaffold_300886.1 Arabidopsis lyrata scaffold_300886.1 N
AT3G07500 Arabidopsis thaliana AT3G07500 N
Bostr.22252s0282 Boechera stricta Bostr.22252s0282 N
Bo5g141470 Brassica oleracea Bo5g141470 N
Cagra.0133s0093 Capsella grandiflora Cagra.0133s0093 N
Carubv10014621m.g Capsella rubella Carubv10014621m.g N
evm.TU.supercontig_8.53 Carica papaya evm.TU.supercontig_8.53 N
Cla015099 Citrullus lanatus Cla015099 N
Ciclev10016654m.g Citrus clementina Ciclev10016654m.g N
orange1.1g028717m.g Citrus sinensis orange1.1g028717m.g N
Cucsa.388100 Cucumis sativus Cucsa.388100 N
Eucgr.K02085 Eucalyptus grandis Eucgr.K02085 N
gene17500-v1.0-hybrid Fragaria vesca gene17500-v1.0-hybrid N
Gorai.N002600 Gossypium raimondii Gorai.N002600 N
MDP0000123745 Malus domestica MDP0000123745 N
MDP0000243502 Malus domestica MDP0000243502 N
mgf009623m Mimulus guttatus mgf009623m N
POPTR_0014s17500 Populus trichocarpa POPTR_0014s17500 N
PRUPE_ppa011264mg Prunus persica PRUPE_ppa011264mg N
30178.m000864 Ricinus communis 30178.m000864 N
SapurV1A.0137s0280 Salix purpurea SapurV1A.0137s0280 N
TCM_002647 Theobroma cacao TCM_002647 N
VIT_00s0269g00010 Vitis vinifera VIT_00s0269g00010 N
VIT_00s0174g00120 Vitis vinifera VIT_00s0174g00120 N